View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17165_low_1 (Length: 666)

Name: NF17165_low_1
Description: NF17165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17165_low_1
NF17165_low_1
[»] chr6 (2 HSPs)
chr6 (88-649)||(33174995-33175554)
chr6 (15-44)||(13433728-13433757)
[»] scaffold0316 (1 HSPs)
scaffold0316 (15-44)||(5509-5538)
[»] chr7 (3 HSPs)
chr7 (15-44)||(5768341-5768370)
chr7 (15-44)||(25419838-25419867)
chr7 (15-44)||(39067146-39067175)
[»] chr5 (1 HSPs)
chr5 (15-44)||(36990879-36990908)
[»] chr4 (2 HSPs)
chr4 (15-44)||(2505264-2505293)
chr4 (15-44)||(27256579-27256608)
[»] chr3 (1 HSPs)
chr3 (15-44)||(52349564-52349593)
[»] chr2 (2 HSPs)
chr2 (15-44)||(7574366-7574395)
chr2 (15-44)||(16668949-16668978)
[»] chr1 (2 HSPs)
chr1 (15-44)||(13786067-13786096)
chr1 (15-44)||(25808047-25808076)


Alignment Details
Target: chr6 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 88 - 649
Target Start/End: Original strand, 33174995 - 33175554
Alignment:
Q  88 agaaattttccccaaaacatcacaaattatcttttcgagcaaaagatcaccaattcttagcaatatacatctcaatgtctcattacttttatcttaattt 187  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33174995 agaaattttccccaaaacatcacaaattatcttttcgagcaaaacatcaccaattcttagcaatatacatctcaatgtctcattacttttatcttaattt 33175094  T
Q  188 cctaagtttttataatgatccaaacgggctacaaactttgttagcttagaagaggattaagtgataatatataagcaagcacaaaataatcatcattcta 287  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33175095 cctaagtttttataatgatccaaacgggctacaaattttgttagcttagaagaggattaagtgataatatataagcaagcacaaaataatcatcattct- 33175193  T
Q  288 aagggtctgtatgttacatattataaattaaaaaactaaagctttttctttatgattattataataaaaattattgtttttgtaaatcaattatcaaaaa 387  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33175194 aagggtctgtgtgttacatattataaattaaaaaactaaagctttttctttatgattattataataaaaattattgtttttgtaaatcaattatcaaaaa 33175293  T
Q  388 accacnnnnnnnattcaaacttgaggtgctagttcaatcttaagtgctcatcattgtaatatcaagacattaagttcaaatctccttggatatatatagt 487  Q
    |||||       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33175294 accac-ttttttattcaaacttgaggtgctagttcaatcttaagtgcttatcattgtaatatcaagacattaagttcaaatctccttggatatatatagt 33175392  T
Q  488 agtaaaataaccattaatgtcactgtaataaaaatccatcgttctccaactctttttataagcaattttatagataaactactcaaagcaatttcccatt 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33175393 agtaaaataaccattaatgtcactgtaataaaaatccatcgttctccaactctttttataagcaattttatagataagctactcaaagcaatttcccatt 33175492  T
Q  588 taagcaatttttaaaatttaaaagctataacaaatgaatgaaaacttcaataagtggttttt 649  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33175493 taagcaattttcaaaatttaaaagctataacaaatgaatgaaaacttctataagtggttttt 33175554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 13433728 - 13433757
Alignment:
Q  15 cataggaaaaatgtaggttagaatacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  13433728 cataggaaaaatgtaggttagaatacatgt 13433757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 5509 - 5538
Alignment:
Q  15 cataggaaaaatgtaggttagaatacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  5509 cataggaaaaatgtaggttagaatacatgt 5538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 5768341 - 5768370
Alignment:
Q  15 cataggaaaaatgtaggttagaatacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  5768341 cataggaaaaatgtaggttagaatacatgt 5768370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 25419838 - 25419867
Alignment:
Q  15 cataggaaaaatgtaggttagaatacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  25419838 cataggaaaaatgtaggttagaatacatgt 25419867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 39067146 - 39067175
Alignment:
Q  15 cataggaaaaatgtaggttagaatacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  39067146 cataggaaaaatgtaggttagaatacatgt 39067175  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 36990908 - 36990879
Alignment:
Q  15 cataggaaaaatgtaggttagaatacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  36990908 cataggaaaaatgtaggttagaatacatgt 36990879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 2505264 - 2505293
Alignment:
Q  15 cataggaaaaatgtaggttagaatacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  2505264 cataggaaaaatgtaggttagaatacatgt 2505293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 27256608 - 27256579
Alignment:
Q  15 cataggaaaaatgtaggttagaatacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  27256608 cataggaaaaatgtaggttagaatacatgt 27256579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 52349593 - 52349564
Alignment:
Q  15 cataggaaaaatgtaggttagaatacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  52349593 cataggaaaaatgtaggttagaatacatgt 52349564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 7574366 - 7574395
Alignment:
Q  15 cataggaaaaatgtaggttagaatacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  7574366 cataggaaaaatgtaggttagaatacatgt 7574395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 16668949 - 16668978
Alignment:
Q  15 cataggaaaaatgtaggttagaatacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  16668949 cataggaaaaatgtaggttagaatacatgt 16668978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 13786096 - 13786067
Alignment:
Q  15 cataggaaaaatgtaggttagaatacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  13786096 cataggaaaaatgtaggttagaatacatgt 13786067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 25808047 - 25808076
Alignment:
Q  15 cataggaaaaatgtaggttagaatacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  25808047 cataggaaaaatgtaggttagaatacatgt 25808076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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