View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17165_low_15 (Length: 250)
Name: NF17165_low_15
Description: NF17165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17165_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 31572264 - 31572497
Alignment:
| Q |
2 |
gaacacacaacttcatgcattccaattattgaaaataaagaattcatggttac-------aatacataagaaactacacaatatgaagaatcatcgcaca |
94 |
Q |
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| T |
31572264 |
gaacacacaacttcatgcattccaattattgaaaataaataattcatggttacaacttacaatacataagaaactacacaatatgaagcatcatcgcaca |
31572363 |
T |
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| Q |
95 |
caagcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctctggttgcacttctcccacgaacagaataaatcaaacccccaagcagt |
194 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31572364 |
caagcttattcttgttcagaaatttactccacccagttatgagcaaatgtctctggttgcacttctcccacgaacagaataaatcaaacccccaagcagt |
31572463 |
T |
|
| Q |
195 |
caacgggcaacatactataatgccaagtaatata |
228 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
31572464 |
caacgggcaatttactataatgccaagtaatata |
31572497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 11492547 - 11492655
Alignment:
| Q |
40 |
agaattcatggttacaatacataagaaactacacaatatgaagaatcatcgcacacaagcttattcttgttcggaaatgcactccacccagttatgagca |
139 |
Q |
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| T |
11492547 |
agaattca-ggttacaatacataagaaactacacaatatgaagcatcactgcacacaagctttttcttgtttgaaaatgcactccacccagttatgagca |
11492645 |
T |
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| Q |
140 |
aatgtctctg |
149 |
Q |
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|||||||||| |
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| T |
11492646 |
aatgtctctg |
11492655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 24730374 - 24730229
Alignment:
| Q |
62 |
aagaaactacacaatatgaagaatcatcgcacacaagcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctc--tggttgcacttc |
159 |
Q |
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||||||||||||||||| ||| |||| || ||||||| | |||||||||| |||||||||||||||||||||||||||||||||| | | ||| || | |
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| T |
24730374 |
aagaaactacacaatattaagcatcactgctcacaagcattttcttgttcgcaaatgcactccacccagttatgagcaaatgtctctatagctgctctgc |
24730275 |
T |
|
| Q |
160 |
tcccacgaacagaataaatcaaacccccaagcagtcaacgggcaac |
205 |
Q |
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| T |
24730274 |
gcacacgaacagagtaaatcaaacccccaggcagtcaacaggcaac |
24730229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 27057828 - 27057880
Alignment:
| Q |
97 |
agcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctctg |
149 |
Q |
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||||| || ||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
27057828 |
agcttttttttgttcgcaaatgcactccacccaattatgagcaaatgtctctg |
27057880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 39833646 - 39833594
Alignment:
| Q |
97 |
agcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctctg |
149 |
Q |
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||||| || ||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
39833646 |
agctttttattgttcgcaaatgcactccacccaattatgagcaaatgtctctg |
39833594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 4272966 - 4273075
Alignment:
| Q |
92 |
acacaagcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctc--tggttgcacttctcccacgaacagaataaatcaaacccccaa |
189 |
Q |
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|||||||||| ||||| || ||||||||||||||||||| |||||||||| ||| ||| ||| || |||| ||||||| | |||||||||||| || |
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| T |
4272966 |
acacaagcttcttcttattaacaaatgcactccacccagttgtgagcaaatgcctccttggctgccctgctccaacgaacacaggaaatcaaacccctaa |
4273065 |
T |
|
| Q |
190 |
gcagtcaacg |
199 |
Q |
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||| |||||| |
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| T |
4273066 |
gcattcaacg |
4273075 |
T |
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