View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17165_low_16 (Length: 248)
Name: NF17165_low_16
Description: NF17165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17165_low_16 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 4237904 - 4237669
Alignment:
| Q |
13 |
aatatattgattttaaatttggccctnnnnnnntgttaaga-tttatcctctgaaaatttacgatttcgactttcatctccgttattagttgaagaaaca |
111 |
Q |
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| T |
4237904 |
aatataatgattttaaattgggccctaaaaaaatgttatgattttatcctct-aaaatttatgatttcgactttcatctatgttattagttgaagaaata |
4237806 |
T |
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| Q |
112 |
tttgactaacatataagtcctgatgacactaccatgtgtatttttcctcaaaatctggatgtcaaatcatcatcttcaaaccatgaattcaatacataac |
211 |
Q |
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| T |
4237805 |
gatgactaacacaaaagtccttgttaccctgctgtgtgtatttttcctcaaaatatggatgccaaatcatcatcttcaaaccatgaatccaatacataac |
4237706 |
T |
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| Q |
212 |
aaattattgagtttcattttatcttaaacccatacaa |
248 |
Q |
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| T |
4237705 |
aaattattgagtttcattttatcttaaacccatacaa |
4237669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 54 - 248
Target Start/End: Complemental strand, 4228628 - 4228435
Alignment:
| Q |
54 |
tttatcctctgaaaatttacgatttcgactttcatctccgttattagttgaagaaacatttgactaacatataagtcctgatgacactaccatgtgtatt |
153 |
Q |
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| T |
4228628 |
tttatcctct-aaaatttacgattttgactttcatctatgttattggttgaagaaatagatgactaacacaaaagtccttgttaccctgctgtgtgtatt |
4228530 |
T |
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| Q |
154 |
tttcctcaaaatctggatgtcaaatcatcatcttcaaaccatgaattcaatacataacaaattattgagtttcattttatcttaaacccatacaa |
248 |
Q |
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| T |
4228529 |
tttcctcaaaatatggatgccaaatcatcatcttcaaaccatgaatccaatacataacaaattattgagtttcattttatcttaaacccatacaa |
4228435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 4248031 - 4247843
Alignment:
| Q |
54 |
tttatcctctgaaaatttacgatttcgactttcatctccgttattagttgaagaaacatttgactaacatataagtcctgatgacactaccatgtgtatt |
153 |
Q |
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| T |
4248031 |
tttatcttctggaaatttacggtttcgattttcatccatattattagttgaagatatagttgactaatacagaagtcctagtcactttgccatgtttgtt |
4247932 |
T |
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| Q |
154 |
tttcctcaaaatctggatgtcaaatcatcatcttcaaaccatgaattcaatacataacaaattattgagtttcattttatcttaaaccc |
242 |
Q |
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| T |
4247931 |
tttctttaatatttggatgtcaaatcataatcttcaaaccatgaatccaataaataacaaattattgagtttcattttatctcaaaccc |
4247843 |
T |
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