View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17165_low_3 (Length: 443)

Name: NF17165_low_3
Description: NF17165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17165_low_3
NF17165_low_3
[»] chr7 (4 HSPs)
chr7 (175-372)||(8027802-8028009)
chr7 (1-106)||(8028077-8028182)
chr7 (369-433)||(8027376-8027440)
chr7 (1-65)||(32663300-32663364)
[»] chr8 (2 HSPs)
chr8 (1-106)||(770711-770817)
chr8 (213-346)||(770995-771124)
[»] chr1 (1 HSPs)
chr1 (1-106)||(51389237-51389342)
[»] chr5 (1 HSPs)
chr5 (4-106)||(4351808-4351911)
[»] chr2 (1 HSPs)
chr2 (369-413)||(24125069-24125113)
[»] chr4 (1 HSPs)
chr4 (250-345)||(43043678-43043769)
[»] chr3 (3 HSPs)
chr3 (250-345)||(25434821-25434912)
chr3 (4-106)||(12572186-12572292)
chr3 (4-106)||(13548650-13548756)
[»] scaffold0063 (1 HSPs)
scaffold0063 (377-413)||(68558-68594)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 175 - 372
Target Start/End: Complemental strand, 8028009 - 8027802
Alignment:
Q  175 ctgaattacttgagtttactaacaatcaatgatttctttct----------aggactagaaagaactcttactcatatatccaattatatccaactgtat 264  Q
    |||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8028009 ctgaattacttgagtttactaacaatcaatgatttctttctgctactatctaggactagaaagaactcttactcatatatccaattatatccaattgtat 8027910  T
Q  265 tgaacaatagcaaacaatgacacaaggtctgtaacattcattattttgtccatatggagttgaggttttatgtattcaatttatgcttagatctgcttct 364  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||||||||    
T  8027909 tgaacaatagcaaaccatgacacaaggtctgtaacattcattattttgtccatatgaagttgagtttttatgtatccaattgatgcttagatctgcttct 8027810  T
Q  365 gttatgat 372  Q
     |||||||    
T  8027809 attatgat 8027802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 8028182 - 8028077
Alignment:
Q  1 ttcgtgaatttgattgttacttgattatatttatataaatcttgggtatttaaaattgaaattatgtaggttatatagaatcatccacaaagttagtcta 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8028182 ttcgtgaatttgattgttacttgattatatttctataaatcttgggtatttaaaattgaaattatgtaggttatatagaatcatccgcaaagttagtcta 8028083  T
Q  101 acacaa 106  Q
    ||||||    
T  8028082 acacaa 8028077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 369 - 433
Target Start/End: Complemental strand, 8027440 - 8027376
Alignment:
Q  369 tgatttcaaccgtaattataatatgatatactcactaataaatgattttataaattgcacaggtt 433  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  8027440 tgatttcaacggtaattataatatgatatactcactaatagatgattttacaaattgcacaggtt 8027376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 32663300 - 32663364
Alignment:
Q  1 ttcgtgaatttgattgttacttgattatatttatataaatcttgggtatttaaaattgaaattat 65  Q
    ||||||||| | |||||||||||| ||| ||| |||||||||| ||  |||||||||||||||||    
T  32663300 ttcgtgaatgttattgttacttgaatatttttttataaatcttaggcgtttaaaattgaaattat 32663364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 770711 - 770817
Alignment:
Q  1 ttcgtgaatttgattgttacttgattatatttatataaatcttgggtatttaaaattgaaattatgtaggt-tatatagaatcatccacaaagttagtct 99  Q
    ||||||||| |||||||||||||||||||||  |||||||||| || || ||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  770711 ttcgtgaatgtgattgttacttgattatattgctataaatcttaggcatataaaattgaaattatgtaggtctatatagaatcatccccaaagttagtct 770810  T
Q  100 aacacaa 106  Q
    |||||||    
T  770811 aacacaa 770817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 213 - 346
Target Start/End: Original strand, 770995 - 771124
Alignment:
Q  213 tctaggactagaaagaactcttactcatatatccaattatatccaactgtattgaacaatagcaaacaatgacacaaggtctgtaacattcattattttg 312  Q
    |||||||| ||||| |||| ||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||||     |||||    
T  770995 tctaggaccagaaataacttttaatcatatatccaattatatccaattgtactgaacaatagcaaaccatgacacaaggtctgcaacattg----ttttg 771090  T
Q  313 tccatatggagttgaggttttatgtattcaattt 346  Q
    |||||||| ||||||| | |||||||| ||||||    
T  771091 tccatatgaagttgagttattatgtatccaattt 771124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 51389342 - 51389237
Alignment:
Q  1 ttcgtgaatttgattgttacttgattatatttatataaatcttgggtatttaaaattgaaattatgtaggtta-tatagaatcatccacaaagttagtct 99  Q
    ||||||||| |||||||||||||||||||||  |||||||||| || |||||||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  51389342 ttcgtgaatgtgattgttacttgattatattgttataaatcttaggcatttaaaattgaaattatgtaggtcagtatagaatcatcc-caaagttagtct 51389244  T
Q  100 aacacaa 106  Q
    |||||||    
T  51389243 aacacaa 51389237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 4351808 - 4351911
Alignment:
Q  4 gtgaatttgattgttacttgattatatttatataaatcttgggtatttaaaattgaaattatgtaggt-tatatagaatcatccacaaagttagtctaac 102  Q
    ||||| || |||||||||| |||| |||  |||||||||| |  ||||||||||||||||||| |||| | ||||||||||||| |||||||||||||||    
T  4351808 gtgaaatttattgttactttattacattgttataaatcttagacatttaaaattgaaattatgcaggtctttatagaatcatccccaaagttagtctaac 4351907  T
Q  103 acaa 106  Q
    ||||    
T  4351908 acaa 4351911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 24125069 - 24125113
Alignment:
Q  369 tgatttcaaccgtaattataatatgatatactcactaataaatga 413  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||    
T  24125069 tgatttcaaccgtaattataatattatatactcactaatagatga 24125113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 345
Target Start/End: Complemental strand, 43043769 - 43043678
Alignment:
Q  250 tatatccaactgtattgaacaatagcaaacaatgacacaaggtctgtaacattcattattttgtccatatggagttgaggttttatgtattcaatt 345  Q
    ||||||| |||||| ||||||| |||  || ||||||||||||||| ||||||    |||||||||||||| | ||||| |||||||||| |||||    
T  43043769 tatatcctactgtactgaacaacagctcaccatgacacaaggtctgcaacatt----attttgtccatatgaaattgagtttttatgtatccaatt 43043678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 345
Target Start/End: Original strand, 25434821 - 25434912
Alignment:
Q  250 tatatccaactgtattgaacaatagcaaacaatgacacaaggtctgtaacattcattattttgtccatatggagttgaggttttatgtattcaatt 345  Q
    ||||||||| |||||||||||| | |  || |||||||||| |||| ||||||    |||||||||||||| | ||||| |||||||||| |||||    
T  25434821 tatatccaattgtattgaacaacaactcaccatgacacaagctctgcaacatt----attttgtccatatgaaattgagtttttatgtatccaatt 25434912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 12572292 - 12572186
Alignment:
Q  4 gtgaatttgattgttacttgattatatttatataaatcttgggtatttaaaattgaaattatgtaggttat----atagaatcatccacaaagttagtct 99  Q
    ||||| || |||||||||| |||| |||  |||||||||| |  |||||||||| |||||||| ||   ||    |||||||||||| ||||||||||||    
T  12572292 gtgaaatttattgttactttattacattgttataaatcttagacatttaaaattaaaattatgcagagaatctttatagaatcatccccaaagttagtct 12572193  T
Q  100 aacacaa 106  Q
    |||||||    
T  12572192 aacacaa 12572186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 13548756 - 13548650
Alignment:
Q  4 gtgaatttgattgttacttgattatatttatataaatcttgggtatttaaaattgaaattatgtaggttat----atagaatcatccacaaagttagtct 99  Q
    ||||| || |||||||||| |||| |||  |||||||||| |  |||||||||| |||||||| ||   ||    |||||||||||| ||||||||||||    
T  13548756 gtgaaatttattgttactttattacattgttataaatcttagacatttaaaattaaaattatgcagagaatctttatagaatcatccccaaagttagtct 13548657  T
Q  100 aacacaa 106  Q
    |||||||    
T  13548656 aacacaa 13548650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 68594 - 68558
Alignment:
Q  377 accgtaattataatatgatatactcactaataaatga 413  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  68594 accgtaattataatatgatatacccactaatagatga 68558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University