View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17165_low_7 (Length: 346)
Name: NF17165_low_7
Description: NF17165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17165_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 4809715 - 4809630
Alignment:
| Q |
1 |
attatagcttgagagtatggtactccgaacttcaaagcctacactataagacccactcttaaagttaagacaaaaacaagaactac |
86 |
Q |
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| T |
4809715 |
attaaagcttgagactagggtactccgaacctcaaagcctacactataagacccactcttaaagttaagacaaaaacaagaactac |
4809630 |
T |
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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 25931960 - 25932030
Alignment:
| Q |
258 |
taacactggttatcactatcatccacactgtccaatataacttgttcattgctatctccatcatatcaccc |
328 |
Q |
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| T |
25931960 |
taacactggttatcactatcatccacactgtccaatataacttgttcattgctatctccatgatatcaccc |
25932030 |
T |
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