View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17165_low_9 (Length: 287)
Name: NF17165_low_9
Description: NF17165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17165_low_9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 32147308 - 32147575
Alignment:
| Q |
20 |
gatctcagcaattttgtagcaacactttatcagtcattgttaacatgaacagagaatgatgctcaccttgtaatttttgtgacaataaaaataataacaa |
119 |
Q |
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| T |
32147308 |
gatctcagcaattttgtagcaacactttatcagtcattgttaacatgaacagagaatgatgctcaccttgtaatttttgtgacaataaaaataattacaa |
32147407 |
T |
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| Q |
120 |
agaacttaatatattatacttgaaatatcccaattttaagtttgatacgaaactagagacccaacacacaataatcatacgtcttaagatgcctataaaa |
219 |
Q |
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| T |
32147408 |
agaacttaatatattatacttgaaatatcccaattgtaagtttgatacgaaaatagagacccaactcacgataatcataagtcttaagatgcctataaaa |
32147507 |
T |
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| Q |
220 |
ggatatagagtatctaaagaacttaacttattgtttctagtacataaccaaacatggcctatatattt |
287 |
Q |
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| T |
32147508 |
ggatatagagtatctaaagagcttaacttattgtttctagtacataaccaaacatggcctatatattt |
32147575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 139 - 287
Target Start/End: Original strand, 32156256 - 32156404
Alignment:
| Q |
139 |
ttgaaatatcccaattttaagtttgatacgaaactagagacccaacacacaataatcatacgtcttaagatgcctataaaaggatatagagtatctaaag |
238 |
Q |
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| T |
32156256 |
ttgaaatatcccaattgtaagtttgatacgaaagtggacacccaactcaagataattttaagtctaaagatgcctataaaaggatatagagtatctaaat |
32156355 |
T |
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| Q |
239 |
aacttaacttattgtttctagtacataaccaaacatggcctatatattt |
287 |
Q |
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| T |
32156356 |
agcttaacttattgtttctagtacataaccaaacatggcctatatattt |
32156404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 2821556 - 2821478
Alignment:
| Q |
209 |
tgcctataaaaggatatagagtatctaaagaacttaacttattgtttctagtacataaccaaacatggcctatatattt |
287 |
Q |
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| T |
2821556 |
tgcctataaaaggatatagaatatctaattagcttagcttattatttctagtacataaccaaacatggcctatatattt |
2821478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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