View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_116 (Length: 227)
Name: NF17166_high_116
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_116 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 38699412 - 38699638
Alignment:
| Q |
1 |
aaaaatatgtaatatatcgtagaatctgacacaaatttttctgatcaagaagatattctgcctgcaaaaataaccatgtcaagaaaaacgtttcaaaata |
100 |
Q |
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| T |
38699412 |
aaaaatatgtaatatatcgtagaatctgacacaaatttttctgatcaagaagatattctgcctgcaaaaataaccatgtcaagaaaaacgtttcaaaata |
38699511 |
T |
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| Q |
101 |
agaaatgcccaaagacttccattctatctctatctcctaagacattggtttaaaattcttaaatataaagagatgcaagagtagatgggtataccacagt |
200 |
Q |
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| T |
38699512 |
agaaatgcccaaagacttccattctatctctatctcctaagacattggtttaaaattcttaaatataaagagatgcaagagtagatgggtataccacagt |
38699611 |
T |
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| Q |
201 |
gtaagcttcaattttttcccgatacac |
227 |
Q |
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||||||||||||||| | ||||||||| |
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| T |
38699612 |
gtaagcttcaattttataccgatacac |
38699638 |
T |
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