View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_16 (Length: 525)
Name: NF17166_high_16
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 10437055 - 10436551
Alignment:
| Q |
1 |
ttcctctttgattactttaccaacaagttgaagaaagaaagaagacacacatcaagtagagctctaaaggagatctagtgtccattagttcgatttgttg |
100 |
Q |
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| T |
10437055 |
ttcctctatgattacattaccaacaagttgaagaaagaaagaagacacgcatcaagtaaagctctaaaggagatctagtgtccattagtacgatttgttg |
10436956 |
T |
|
| Q |
101 |
ggtcatggatctcaagctttgaccactaagatctaatacccactaacactccacattgggaatatgctaaaaatatctaatgtgatatcaaatttcaata |
200 |
Q |
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| T |
10436955 |
gg----ggatctcaagctttgaccactaaaatctaatacccactaacacttcacattgggaatatgctaaaaatatctaatgtgatatcaaatttcaata |
10436860 |
T |
|
| Q |
201 |
tggccaataatcccactaaaacagaccatgattcaaacacaaatgagaccatgtagtcgcaattaattacaactaaaacgactatttcagttaaatttaa |
300 |
Q |
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| T |
10436859 |
tggccaataatcccactaaaacagaccatgattcaaacacaaatgagaccatgtagtcgcaattaattaccactaaaacgattatttcagttaaatttaa |
10436760 |
T |
|
| Q |
301 |
agagatgttgatagttcaattgatttgagttaaaggttaagaagatgaatatcaaagttatttgagacatatgaactccaaaaggctccaatgcaatata |
400 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10436759 |
agagatgttgattgttcaattgatttgagttaaaggttaagaagatgaatatcaaagttatttgagacatacgaactccaaaaggctccaatgcaatata |
10436660 |
T |
|
| Q |
401 |
cattcttccattttcatttgcaatctttttggtcttgtttaggccaacatactcatttctaacatcatctacgtacctcatattctactatccaaaagct |
500 |
Q |
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| T |
10436659 |
cattcttccattttcatttgcaatctttttggtcttgtttaggccaacatactcatttctaacatcatctacgtacctcatattctactatccaaaagct |
10436560 |
T |
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| Q |
501 |
ataactatt |
509 |
Q |
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| T |
10436559 |
ataactatt |
10436551 |
T |
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