View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_22 (Length: 471)
Name: NF17166_high_22
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 25 - 465
Target Start/End: Original strand, 32076789 - 32077229
Alignment:
| Q |
25 |
aacaaatatctaatattatgagccttaaagattgccggaatattggatttggttacctggatatttcacggggtagtgaccattttgttcgaaaaggtgt |
124 |
Q |
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| T |
32076789 |
aacaaatatctaatattatgagccttaaagattgccggaatattggatttggttacctggatatttcacggggtagtgaccattttgttcgaaaatgtgt |
32076888 |
T |
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| Q |
125 |
tggtgtaggaacacagagaaaatagatgctggcataggccaaaacaatgctgctggaatattccttcggtttgcaaccacaacagcccaatacaacaaag |
224 |
Q |
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| T |
32076889 |
tgatgtaggaacacagagaaaatagatgctggcataggccaaaacaatgctgctggaatattccttcggtttgcaaccacaacagcccaatacaacaaag |
32076988 |
T |
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| Q |
225 |
tatcataaacaatgatagagggagggtgatcaagtaggtcaagtagctcctcaaatggtgcttccatctttgtcatgacatcttccatgaatgcaggatg |
324 |
Q |
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| T |
32076989 |
tatcataaacaatgatagagggagggtgatcaagtaggtcaagtagctcctcaaagggtgcttccatctttgtcatgacatcttccatgaatgcaggatg |
32077088 |
T |
|
| Q |
325 |
gtcgcggccgcggataagttcggagggaataacgttcgggatcgaacgaaagcttatgttgtcgggttttggctcggaggagatgaagcttagccattct |
424 |
Q |
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| T |
32077089 |
gtcgcggccacagataagttccgagggaataacgttcgatcccgaacgaaagcttatgttgtcaggttttggctcggaggagatgaagcttagccattct |
32077188 |
T |
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| Q |
425 |
tcagtgactacaaaggaaacatgaatgttgatattcttgga |
465 |
Q |
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| T |
32077189 |
tcagtgactacaaaggaaacatgaatgttgctattgttgga |
32077229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 465
Target Start/End: Complemental strand, 31004634 - 31004475
Alignment:
| Q |
306 |
cttccatgaatgcaggatggtcgcggccgcggataagttcggagggaataacgttcgggatcgaacgaaagcttatgttgtcgggttttggctcggagga |
405 |
Q |
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|||||||||| ||| |||||||| || || || |||||||| |||| |||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |
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| T |
31004634 |
cttccatgaagtcagcgtggtcgcgaccacgaatgagttcggatggaacaacgttggggatcgaacggaagctgatgttgtcgggttttggttcggagga |
31004535 |
T |
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| Q |
406 |
gatgaagcttagccattcttcagtgactacaaaggaaacatgaatgttgatattcttgga |
465 |
Q |
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| T |
31004534 |
gatgaaggttaaccattcttcggtgacaataaatgtaacaaggatgttgttgttcttgga |
31004475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 30987837 - 30987791
Alignment:
| Q |
263 |
tcaagtagctcctcaaatggtgcttccatctttgtcatgacatcttc |
309 |
Q |
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| T |
30987837 |
tcaagaagcttctcaaacggtgcttccatctttgtcatgacagcttc |
30987791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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