View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_23 (Length: 471)
Name: NF17166_high_23
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 48 - 455
Target Start/End: Complemental strand, 8310077 - 8309666
Alignment:
| Q |
48 |
gagaaacaatttatggtgaaatggttggctgagcgggataatcttgatgaagaagaagtggatcaatgggcgataaacaatgctgctatgatcattaaga |
147 |
Q |
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| T |
8310077 |
gagaaacaatttatggtgaaatggttggctgagcgggataatcttgatgaagaagaagtggatcaatgggcgataaacaatgctgctatgatcattaaga |
8309978 |
T |
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| Q |
148 |
tttatacggcattgggatttatcagaaacattaggccggttgttaagttgcttgatgatattcagatttcaaatgagaacgtggaggcaatgagagctga |
247 |
Q |
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| T |
8309977 |
tttatacggcattgggatttatcagaaacattaggccggttgttaagttgcttgatgatattgagatttcaaatgagaacgtggaggcaatgagagctga |
8309878 |
T |
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| Q |
248 |
tatggaatcaatggaggttagagtgaagtgtctcgaaaactttattcggatttatttcaagcgcggatctatctcaagtcagtaacatcttc----atat |
343 |
Q |
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| T |
8309877 |
tatggaatcaatggaggttagagtgaagtgtctcgaaaactttattcggatttatctcaagcgcggatctatctcaagtcagtaacatcttcatatatat |
8309778 |
T |
|
| Q |
344 |
tctcatttatgattaatatcaatgctttcgtgcgttttgctagattatcttgtatggttgcttctttttgcttatttatttaaaaccaatgaaggattaa |
443 |
Q |
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| T |
8309777 |
tctcatttatgattaatatcaatgctttcgcgcgttttgctagattatcttgtatggttgcttctttttgcttatttatttaaaaccaatgaaggattaa |
8309678 |
T |
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| Q |
444 |
tgtcggttatct |
455 |
Q |
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| T |
8309677 |
tgtcggttatct |
8309666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 198 - 326
Target Start/End: Complemental strand, 27662942 - 27662814
Alignment:
| Q |
198 |
cttgatgatattcagatttcaaatgagaacgtggaggcaatgagagctgatatggaatcaatggaggttagagtgaagtgtctcgaaaactttattcgga |
297 |
Q |
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| T |
27662942 |
cttgatgatatacagatttcaaatggcaacgtggaggcaatgagagttgatgtggaatctatggaggaaagggtgaagggtctggaaagctttatacgga |
27662843 |
T |
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| Q |
298 |
tttatttcaagcgcggatctatctcaagt |
326 |
Q |
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|||| | ||| ||||||||||||||||| |
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| T |
27662842 |
tttaccttaagtgcggatctatctcaagt |
27662814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 27663044 - 27662957
Alignment:
| Q |
48 |
gagaaacaatttatggtgaaatggttggctgagcgggataatcttgatgaagaagaagtggatcaatgggcgataaacaatgctgcta |
135 |
Q |
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| T |
27663044 |
gagaaacaatttatgatgaacttgttgcctgagcggaataattttgatgaagaagaaaggaaacgatgggcgataaacaatgcagcta |
27662957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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