View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_27 (Length: 438)
Name: NF17166_high_27
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_27 |
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| [»] scaffold0899 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 40032130 - 40031804
Alignment:
| Q |
18 |
atacccctcatttgatatgacattataaagtttaaatatatgtggttaaagagtttaatttggatggtgaaagagtttaagaaaggaggtcaatctctct |
117 |
Q |
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| T |
40032130 |
atacccctcatttgatatgacattataaagtttaaatatatgtggttaaagagttt-----ggatggcgaaagagtttaagaaaggagttcaatctctct |
40032036 |
T |
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| Q |
118 |
taatattttttctttcctcttt-aacaaannnnnnnn------gagcaatctttaacaatattgtaacaactaatattcgcatatttcaatnnnnnnnn- |
209 |
Q |
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| T |
40032035 |
taatattttttctttcctcttttaacaatttttttttttttttgagcaatctttaataatattgtaacaactaatatttgcatatttcaataaaaaaaaa |
40031936 |
T |
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| Q |
210 |
gttaattaagtacaatcatatcaacattaatacatcgaatttcatcgtaaattccaaaattaaccatacttgagtgagagaaagtagtgtaggatgaata |
309 |
Q |
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| T |
40031935 |
gttaattaagtacaatcatatcaacattaatacatcgaatttcatcgtaaattccgaaattaaccatacttgagtgagagaaagtagtgtaggatgaata |
40031836 |
T |
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| Q |
310 |
cctcattatatgaatgtgttacacttcatcta |
341 |
Q |
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| T |
40031835 |
cctcattatatgtctgtgttacacttcatcta |
40031804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 362 - 424
Target Start/End: Complemental strand, 39977504 - 39977442
Alignment:
| Q |
362 |
gggaaatactttttcctacgaaccatatatccacggaaaccaagaatttcacttatcaccacc |
424 |
Q |
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| T |
39977504 |
gggaaatactttttcctacgaaccatatatccacgaaaaccaagaatttcacttatcaccacc |
39977442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 412
Target Start/End: Original strand, 26381578 - 26381629
Alignment:
| Q |
361 |
agggaaatactttttcctacgaaccatatatccacggaaaccaagaatttca |
412 |
Q |
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| T |
26381578 |
agggaaatgctttttcctacgaaccatatatccacgaaaaccaagaatttca |
26381629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0899 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0899
Description:
Target: scaffold0899; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 424
Target Start/End: Original strand, 2168 - 2231
Alignment:
| Q |
361 |
agggaaatactttttcctacgaaccatatatccacggaaaccaagaatttcacttatcaccacc |
424 |
Q |
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| T |
2168 |
agggaaatactttttcctacaaaccatatatccacgaaaaccaagaatttcgattatcaccacc |
2231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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