View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_high_3 (Length: 736)

Name: NF17166_high_3
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_high_3
NF17166_high_3
[»] chr1 (3 HSPs)
chr1 (326-736)||(31803857-31804271)
chr1 (10-115)||(31801458-31801563)
chr1 (188-257)||(31801562-31801631)
[»] chr4 (1 HSPs)
chr4 (541-576)||(47457969-47458004)
[»] chr2 (1 HSPs)
chr2 (378-437)||(35755239-35755298)
[»] chr5 (4 HSPs)
chr5 (541-575)||(26521585-26521619)
chr5 (378-435)||(26884685-26884742)
chr5 (379-432)||(30639298-30639351)
chr5 (396-429)||(40234112-40234145)
[»] chr7 (1 HSPs)
chr7 (378-435)||(22349849-22349906)
[»] chr6 (1 HSPs)
chr6 (378-435)||(10098892-10098949)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 326 - 736
Target Start/End: Original strand, 31803857 - 31804271
Alignment:
Q  326 aatattagtggaaaatacttagtggaataaaactaatgccccgaacattatgatttgatccatgcagtcgaccatacttagtggaataaaacttgattgt 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31803857 aatattagtggaaaatacttagtggaataaaactaatgccccgaacgttatgatttgatccatgcagtcgaccatacttagtggaataaaacttgattgt 31803956  T
Q  426 tgttattgtttactatactcacgtgcataaaatattagtctt-aaggcatacttcattcgatgttatatttaagcaataaaaagagaatgcaccccgtct 524  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  31803957 tgttattgtttactatactcgcgtgcataaaatattagtcttaaaggcatacttcattcgatcttatatttaagcaacaaaaagagaatgcaccccgtct 31804056  T
Q  525 aagaaggttgagttataccaacaatgaattggttcaagtggtaagagatttggacatcttaagtatga-tcagagttcaatttctaattattatgtatg- 622  Q
    ||||||||||||||||||||||| | |||||||||||||| ||||||||||| || |||||| ||||| | |||||||||||||||| ||||| |||||     
T  31804057 aagaaggttgagttataccaacagtaaattggttcaagtgataagagatttgaacttcttaaatatgattaagagttcaatttctaactattacgtatga 31804156  T
Q  623 -nnnnnnnnntcgattgaaacgatagaactcgtcttatgtaactcataggttccctactaatattgtagt-nnnnnnnnntatcacttacagtatacgaa 720  Q
              ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||          ||| ||||||||||||||||    
T  31804157 aaaaaaaaaatcgattgaaacgagagaactcgtcttgtgtaactcataggttccctactaatattgtagtaaaaataaaatat-acttacagtatacgaa 31804255  T
Q  721 ctagattattatagtt 736  Q
    ||||||||||||||||    
T  31804256 ctagattattatagtt 31804271  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 31801458 - 31801563
Alignment:
Q  10 agcagcagagacagacagaggctctgttcttctttcttgattggaattttgattcctgattgttgcttgttgggtcctcgcaatcacaaaccctaattac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  31801458 agcagcagagacagacagaggctctgttcttctttcttgattggaattttgattcctgattgttgcttgttgggtcctgccaatcacaaaccctaattac 31801557  T
Q  110 tggttt 115  Q
    ||||||    
T  31801558 tggttt 31801563  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 31801562 - 31801631
Alignment:
Q  188 ttcacccaaatatttcatcataatgcccagaataaccttgcccgcatttttatttttatgcattttatat 257  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31801562 ttcaccaaaatatttcatcataatgcccagaataaccttgcccgcatttttatttttatgcattttatat 31801631  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 576
Target Start/End: Complemental strand, 47458004 - 47457969
Alignment:
Q  541 accaacaatgaattggttcaagtggtaagagatttg 576  Q
    |||||||||||||| |||||||||||||||||||||    
T  47458004 accaacaatgaattcgttcaagtggtaagagatttg 47457969  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 437
Target Start/End: Complemental strand, 35755298 - 35755239
Alignment:
Q  378 atttgatccatgcagtcgaccatacttagtggaataaaacttgattgttgttattgttta 437  Q
    ||||||||||||||| ||||| |||||||||| ||||  |||| |||||||| |||||||    
T  35755298 atttgatccatgcagccgaccctacttagtgggataaggcttggttgttgttcttgttta 35755239  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 575
Target Start/End: Complemental strand, 26521619 - 26521585
Alignment:
Q  541 accaacaatgaattggttcaagtggtaagagattt 575  Q
    ||||| |||||||||||||||||||||||||||||    
T  26521619 accaaaaatgaattggttcaagtggtaagagattt 26521585  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 26884742 - 26884685
Alignment:
Q  378 atttgatccatgcagtcgaccatacttagtggaataaaacttgattgttgttattgtt 435  Q
    |||||||||||| || |||||  ||||||||||||||  ||||||||||||| |||||    
T  26884742 atttgatccatgtagccgaccccacttagtggaataaggcttgattgttgttgttgtt 26884685  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 379 - 432
Target Start/End: Complemental strand, 30639351 - 30639298
Alignment:
Q  379 tttgatccatgcagtcgaccatacttagtggaataaaacttgattgttgttatt 432  Q
    ||||||||||| |||| ||| |||||||||| |||| ||||| |||||||||||    
T  30639351 tttgatccatgtagtcaaccctacttagtgggataagacttggttgttgttatt 30639298  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 429
Target Start/End: Original strand, 40234112 - 40234145
Alignment:
Q  396 accatacttagtggaataaaacttgattgttgtt 429  Q
    |||||||||||||||||||||||| |||||||||    
T  40234112 accatacttagtggaataaaacttcattgttgtt 40234145  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 22349849 - 22349906
Alignment:
Q  378 atttgatccatgcagtcgaccatacttagtggaataaaacttgattgttgttattgtt 435  Q
    |||||||||||| ||||||||  ||||||||| ||||  ||||||||||||| |||||    
T  22349849 atttgatccatgtagtcgaccccacttagtgggataaggcttgattgttgttgttgtt 22349906  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 10098949 - 10098892
Alignment:
Q  378 atttgatccatgcagtcgaccatacttagtggaataaaacttgattgttgttattgtt 435  Q
    |||||||||||| | ||||||  ||||||||| |||| |||||||||||||| |||||    
T  10098949 atttgatccatgtaatcgaccccacttagtgggataagacttgattgttgttgttgtt 10098892  T

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