View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_30 (Length: 428)
Name: NF17166_high_30
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_30 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: scaffold0169 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Original strand, 25653 - 26066
Alignment:
| Q |
15 |
tgaagcactgtcttattctcaccttaaagtataaacttttcaataacttgcttatagtgcccacatctcagtatatgaagctaagccatatcaacttcgt |
114 |
Q |
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| T |
25653 |
tgaagcactgtcttattctcaccttaaagtataaacttttcaataacttgcttatagtgcccacatctcagtatatgaagctaagccatatcaacttcgt |
25752 |
T |
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| Q |
115 |
tgattaaaataaattagtcaattcatctatagcatatgtggttggaatcttttggtctttgagattgttgtggttgctactaagtttgcatgcctaatat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25753 |
tgattaaaataaattagtcaattcatctatagcatatgtggttggaatcttttggtctttgagattgttgtggttgctactaagtttgcatgcctaatat |
25852 |
T |
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| Q |
215 |
tttaaggtgcaaattggagtatgttgtacactttgattacatgattgtggtttctttttcgtgtagtagtagtagttacgaaacacgattgaattaaaga |
314 |
Q |
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| T |
25853 |
tttaaggtgcaaattggagtatgttgtacactttgattacatgattgtggtttctttttcgtgtagtagtagtagttacgaaacacgattgaattaaaga |
25952 |
T |
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| Q |
315 |
agataaaacaaacgcaatcttccaactaatgctaaccaggagcaatgcaacattgtaaatgtgaacttaacatatgaatgtatttgtattttatcaaact |
414 |
Q |
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| T |
25953 |
aaataaaacaaacgcaatcttccaactaatgctaaccaggagcaatgcaacattgtaaatgtgaacttaacatatgaatgtatttgtattttatcaaact |
26052 |
T |
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| Q |
415 |
ttttaattaggacc |
428 |
Q |
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| T |
26053 |
ttttaattaggacc |
26066 |
T |
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Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 152 - 418
Target Start/End: Original strand, 4442920 - 4443193
Alignment:
| Q |
152 |
gtggttggaatcttttggtctttgagattgttgtggttgctactaagtttgcatgcctaatattttaaggtgcaaattggagtatgttgtacactttgat |
251 |
Q |
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| T |
4442920 |
gtggttggaatcttttggtctttgagattgttgtggttgctactaagtttgtgtgccgaagattttgaggtgcaaattggagtatgtggaacactttgat |
4443019 |
T |
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| Q |
252 |
tacatgattgtggtttctttttcgtg--------tagtagtagtagttacgaaacacgattgaatt--aaagaagataaaacaaacgcaatcttccaact |
341 |
Q |
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| T |
4443020 |
tacatgattgtggtttctttttcgtgtagtagtatagtagtagtagttacaaaacacgattgaattaaaaagaaaataaaacaaatgcaatcttccaact |
4443119 |
T |
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| Q |
342 |
aatgctaaccaggagcaatgcaacattgtaaatgtgaacttaacatatgaa--tgtatttgtattttatcaaacttttt |
418 |
Q |
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| T |
4443120 |
aatcctaaccatga-----ccatcattgtaaatgtaaacttaatatatgaatgtgtatttgtatttaatcaaacttttt |
4443193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 4445260 - 4445403
Alignment:
| Q |
153 |
tggttggaatcttttggtctttgagattgttgtggttgctactaagtttgcatgcctaatattttaaggtgcaaattggagtatgttgtacactttgatt |
252 |
Q |
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||||||||||||| || ||||||||||||||||||||| ||||||||||| || | || ||||| ||| || ||| | |||||| | |||| ||||||| |
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| T |
4445260 |
tggttggaatcttatgctctttgagattgttgtggttgttactaagtttg--tg-caaagattttgaggcgctaatagtagtatggtttacaatttgatt |
4445356 |
T |
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| Q |
253 |
acatgattgtggtttctttttcgtgtagtagtagtagttacgaaaca |
299 |
Q |
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| T |
4445357 |
gcgtaattttgatttctttttcgtgtagtagttgtagtaatgaaaca |
4445403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 8343447 - 8343514
Alignment:
| Q |
33 |
tcaccttaaagtataaacttttcaataacttgcttatagtgcccacatctcagtatatgaagctaagc |
100 |
Q |
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| T |
8343447 |
tcaccttaaaatatagatttttcaatcacttgcttatagtgccaaaatctcagtatatgtagccaagc |
8343514 |
T |
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