View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_33 (Length: 418)
Name: NF17166_high_33
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 9 - 396
Target Start/End: Complemental strand, 11711302 - 11710917
Alignment:
| Q |
9 |
gagatgaaaagagataaggactatcacttactcacaagtaannnnnnnnnnnnnnacgcacttgcacatgatcttaaattaataatataagtagctagct |
108 |
Q |
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| T |
11711302 |
gagatgaaaagagataaggactatcacttactcacaagtaagtgtgtgtgtgt--acgcacttgcacatgatcttaaattaataatataagtagctagct |
11711205 |
T |
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| Q |
109 |
ccatgcagctgacatgagaagatcttactggcatgatgaatatgcatgtgtgtggccagtctcataaagctaaaggaaaatatctttcaggtaggcacta |
208 |
Q |
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| T |
11711204 |
ccatgcagctgacatgagaagatcttactggcatgatgaatatgcatgtgtgtggccagtctcataaagctaaaggaaaatatctttcaggtaggcacta |
11711105 |
T |
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| Q |
209 |
agtaaacattgtattagacaaactaacatttgaaagaaaatatgaattaatatagtgtttggatatgctgttaactcctcaatctcacagcccaattcta |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11711104 |
agtaaacattgtattagacaaactaacatttgaaagaaaatatgaattaatatagtgtttggatatgctgttaactcctcaatctcacagcccaattcta |
11711005 |
T |
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| Q |
309 |
attctgatgtgtttttcaaagctataaactgcataacctaactaacacatgctaactaagaattagatccaagttttgttttaccatt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11711004 |
attctgatgtgtttttcaaagctataaactgcataacctaactaacacatgctaactaagaattagatccaagttttgttttaccatt |
11710917 |
T |
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