View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_38 (Length: 388)
Name: NF17166_high_38
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 29471253 - 29471624
Alignment:
| Q |
1 |
cattcagtgattgatatttttggaatgtgttatcaatgtacaattcttgatgatccaggaaatgatctagataaccaaaaatgcttcaacttcactatca |
100 |
Q |
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| T |
29471253 |
cattcagtgattaatatttctggattgtgtaatcaatgtacaattcttgatgatccaggaaatgatctagataaccaaaaatgcttcaacttcactatca |
29471352 |
T |
|
| Q |
101 |
aaataaataagccatagcatggaaaatgcatgagagccactgccaagtacctgaaaatccaaaaatgtcaagagttatatatgataatgatcactagaaa |
200 |
Q |
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| T |
29471353 |
aaataaataagccatagcatggaaaatgcatgagagccactgccaagtacctgaaaatccaaaaatgtcaagagatatgtatgataatgatcactagaaa |
29471452 |
T |
|
| Q |
201 |
ttagttaagtatttattcattcaactacaaaatgtgactaaacaacttttcatatatgctgtgaattgttttcataaactatcacaaattttttattgaa |
300 |
Q |
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| T |
29471453 |
ttagttaagtattt----attcaactacaaaatgtgactaaacaactcttcatatatgctgtgaattgttttaataaactatcacataaaatttattgaa |
29471548 |
T |
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| Q |
301 |
atcgcattataaaatatgactcaaatacttaaataaattgtgtgtaagacctaactcaaccgataatatcgatatt |
376 |
Q |
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| T |
29471549 |
atcacattataaaatgtgactcaaatacttaaacaaattatgtgtaagacctagctcaaccgacaataccgatatt |
29471624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 29461618 - 29461966
Alignment:
| Q |
1 |
cattcagtgattgatatttttggaatgtgttatcaatgtacaattcttgatgatccaggaaatgatctagataaccaaaaatgcttcaacttcactatca |
100 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29461618 |
cattcagtgattaatatttttggaatgtgtactcaatgtacaattcttgatgatccaggaaatgatctatttaaccaaaaatgcttcaacttcactatca |
29461717 |
T |
|
| Q |
101 |
aaataaataagccatagcatggaaaatgcatgagagccactgccaagtacctgaaaatccaaaaatgtcaagagttatatatgataatgatcactagaaa |
200 |
Q |
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||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| || | ||||||||||||| || | ||||||| |||||| |
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| T |
29461718 |
aaataaataagccgtagcatggaaaatgcatgagattcactcccaagtacctgaatatac-aaaatgtcaagaggta------agtatgatcattagaaa |
29461810 |
T |
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| Q |
201 |
ttagttaagtatttattcattcaactacaaaatgtgactaaacaacttttcatatatgctgtgaattgttttcataaactatcacaaattttttattgaa |
300 |
Q |
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||| || ||||| ||||||||||||||||||||| ||| | ||| |||||| | ||||||| |||||||| ||||| || | | ||| || |
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| T |
29461811 |
tta---aaatattt----attcaactacaaaatgtgactgaactattttccatataagttgtgaatggttttcatgaactaccataga----agattaaa |
29461899 |
T |
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| Q |
301 |
atcgcattataaaatatgactcaaatacttaaataaattgtgtgtaagacctaactcaaccgataata |
368 |
Q |
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|| | ||||||||| ||| ||||||||||||| ||||||| |||||||||| ||||||||| |||| |
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| T |
29461900 |
ctc-cgttataaaatgtgattcaaatacttaaacaaattgtccgtaagacctagctcaaccgacaata |
29461966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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