View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17166_high_4 (Length: 722)
Name: NF17166_high_4
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 8 - 583
Target Start/End: Complemental strand, 48833679 - 48833103
Alignment:
| Q |
8 |
tgtaaacttgtaagtcataagtttatatttctattttgaacatttttt--caaatttttcatgttcaaataatatcattctaaatgtaaatacatgccac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48833679 |
tgtaaacttgtaagtcataagtttatatttctattttgaacattttttttcaaatttttcatgttcaaataatatcattctaaatgtaaatatatgccac |
48833580 |
T |
|
| Q |
106 |
caaaatgtactaggaaatgaacattacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtc |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48833579 |
caaa-tgtactaggaaatgaacattacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtc |
48833481 |
T |
|
| Q |
206 |
caaatggtgggttttgttttgaaacctgatattcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagacc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48833480 |
caaatggtgggttttgttttgaaacctgatattcattgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcatacgacc |
48833381 |
T |
|
| Q |
306 |
aagatcaacaacaattcttaatccactaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttctactctct |
405 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48833380 |
aagatcaacaacaattgttaatccactaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttctactctct |
48833281 |
T |
|
| Q |
406 |
ttttctccaaaccatcccatggagaatgtagaacaaacaatctcagagagattcaaacctctctttttcactgaggcaataaatggaggatatttctttg |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48833280 |
ttttctccaaaccatcccatggagaatgtagaacaaacaatctcagagagattcaaacctctctttttcactgaggcaataaaaggaggatatttctttg |
48833181 |
T |
|
| Q |
506 |
gaagttctattgcaatggattgttcatcaacagatagtgtagggaaaccattccctttgtaaacattgtcagagacaa |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48833180 |
gaagttctattgcaatggattgttcatcaacagatagtgtagggaaaccattccctttgtaaacattgtcagagacaa |
48833103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 128 - 704
Target Start/End: Original strand, 48817383 - 48817959
Alignment:
| Q |
128 |
attacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggtgggttttgttttga |
227 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48817383 |
attacctaacactgtgaccattgatctgaaagccaggaccttgaggttgataactagcaagactatgctgttttggtccaaatggtggactttgttttga |
48817482 |
T |
|
| Q |
228 |
aacctgatattcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagaccaagatcaacaacaattcttaat |
327 |
Q |
| |
|
|||| || ||||| |||||||| |||||||| | ||||| || || ||||| ||||||||||||||||| |||| ||||||| | || || | | | |
|
|
| T |
48817483 |
aaccctgtaatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttcattagactaagatcagccaccatggtgatt |
48817582 |
T |
|
| Q |
328 |
ccactaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttctactctctttttctccaaaccatcccatgg |
427 |
Q |
| |
|
||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
48817583 |
ccagtaataggcctaacatatatattaacagtactttctttcataaaacagtcaactctcacagtccttctattctctttttctccaaaccatcccatag |
48817682 |
T |
|
| Q |
428 |
agaatgtagaacaaacaatctcagagagattcaaacctctctttttcactgaggcaataaatggaggatatttctttggaagttctattgcaatggattg |
527 |
Q |
| |
|
||| |||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48817683 |
tgaaactagaacaaaccacctcagagagattcaaacctctcttttgcactgaggcaataaaaggaggatatttctttggaagttctattgcaatggcttg |
48817782 |
T |
|
| Q |
528 |
ttcatcaacagatagtgtagggaaaccattccctttgtaaacattgtcagagacaatgatcctcaaccttaaatctattagtatctcatggctttggcca |
627 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48817783 |
ttcatcaacggttagtgtagggaaaccattccctttgtaaacattgtcatagacaattctcttcaaccttaaatctattagtatctcatggttttggcca |
48817882 |
T |
|
| Q |
628 |
ttgatgatagcaatgataaaggctttacgagggatagttatagcacttggtttgaaagattcccatttgagaatagc |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
48817883 |
ttgatgatagcaatgataaaggctttacgagggatagttataacacttggtttcaaagtttcccatttgagaatagc |
48817959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 130 - 657
Target Start/End: Original strand, 48791837 - 48792364
Alignment:
| Q |
130 |
tacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggtgggttttgttttgaaa |
229 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
48791837 |
tacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgttttgaaa |
48791936 |
T |
|
| Q |
230 |
cctgatattcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagaccaagatcaacaacaattcttaatcc |
329 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
48791937 |
cctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatggttaatcc |
48792036 |
T |
|
| Q |
330 |
actaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttctactctctttttctccaaaccatcccatggag |
429 |
Q |
| |
|
|||||||||||||||||| ||||| ||| | ||||||||||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
48792037 |
actaataggcctcacatatatattaacactgttttctttcataaaacagtcaactctcacagtccttttactctcttcttctccaaaccatcccatggag |
48792136 |
T |
|
| Q |
430 |
aatgtagaacaaacaatctcagagagattcaaacctctctttttcactgaggcaataaatggaggatatttctttggaagttctattgcaatggattgtt |
529 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||||||||||||||| ||||| || | |||||||||| |||||| ||||| |||| ||||| |
|
|
| T |
48792137 |
aatgtagaacaaaccacttcagagagatttaaacctctctttttcactgaagcaatgaaagcaggatatttcagtggaagctctatggcaacaccttgtt |
48792236 |
T |
|
| Q |
530 |
catcaacagatagtgtagggaaaccattccctttgtaaacattgtcagagacaatgatcctcaaccttaaatctattagtatctcatggctttggccatt |
629 |
Q |
| |
|
| ||||| |||| |||||||||||| || || | ||||||||||||| |||| | ||||||||| ||| |||| ||||||||||||||| ||||| |
|
|
| T |
48792237 |
cctcaacggataagatagggaaaccatatcccttatgaacattgtcagagtcaatagttttcaaccttatatcaattactatctcatggctttgtccatt |
48792336 |
T |
|
| Q |
630 |
gatgatagcaatgataaaggctttacga |
657 |
Q |
| |
|
||||||||||| || ||| | ||||||| |
|
|
| T |
48792337 |
gatgatagcaaggacaaaagatttacga |
48792364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 129 - 657
Target Start/End: Original strand, 15827308 - 15827836
Alignment:
| Q |
129 |
ttacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggtgggttttgttttgaa |
228 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
15827308 |
ttacctaacactatggccattgatcaagaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggaggtctttgttttgaa |
15827407 |
T |
|
| Q |
229 |
acctgatattcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagaccaagatcaacaacaattcttaatc |
328 |
Q |
| |
|
||| |||||||||||||||||| ||||||||| ||||| ||| || |||||||| |||||||||||||| || ||||||||| |||| ||| |||||| |
|
|
| T |
15827408 |
gccttatattcagtgttctcagccgtaggcacaacttcaacttctctatcatgatattcaacaattttcatgagtccaagatcagcaaccattgttaatc |
15827507 |
T |
|
| Q |
329 |
cactaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttctactctctttttctccaaaccatcccatgga |
428 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||| ||||||||||||| || |||| |||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
15827508 |
cactaataggcctcacaaaaaaattaacagtgttttctttcataaaacaatcaactctcacagtccttttactctcttcttctccaaaccatcccatgga |
15827607 |
T |
|
| Q |
429 |
gaatgtagaacaaacaatctcagagagattcaaacctctctttttcactgaggcaataaatggaggatatttctttggaagttctattgcaatggattgt |
528 |
Q |
| |
|
||||| || ||| || | |||||||||||||||||||||||||| | ||| ||||| || |||||||||||| |||||| | | | ||| |||| |
|
|
| T |
15827608 |
gaatggagcacacactacttcagagagattcaaacctctcttttttagtgaagcaatgaaaggaggatatttcaatggaagctttgtgacaagaccttgt |
15827707 |
T |
|
| Q |
529 |
tcatcaacagatagtgtagggaaaccattccctttgtaaacattgtcagagacaatgatcctcaaccttaaatctattagtatctcatggctttggccat |
628 |
Q |
| |
|
|| |||| ||||| |||| ||||||| || |||| |||||||||||||||||| | ||||||||| ||| |||| ||||||||||||||| |||| |
|
|
| T |
15827708 |
tcctcaagagataacataggaaaaccatatcccttgtgaacattgtcagagacaattgttttcaaccttatatcaattactatctcatggctttgtccat |
15827807 |
T |
|
| Q |
629 |
tgatgatagcaatgataaaggctttacga |
657 |
Q |
| |
|
||||||||||||| | ||||| ||||||| |
|
|
| T |
15827808 |
tgatgatagcaataacaaaggatttacga |
15827836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 576 - 704
Target Start/End: Complemental strand, 48832767 - 48832639
Alignment:
| Q |
576 |
agagacaatgatcctcaaccttaaatctattagtatctcatggctttggccattgatgatagcaatgataaaggctttacgagggatagttatagcactt |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48832767 |
agagacaatgatcctcaaccttaaatctattagtatctcatggctttggccattgatgatagcaatgataaaggctttacgagggatagttatagcactt |
48832668 |
T |
|
| Q |
676 |
ggtttgaaagattcccatttgagaatagc |
704 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48832667 |
ggtttgaaagattcccatttgagaatagc |
48832639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 413 - 702
Target Start/End: Complemental strand, 40844376 - 40844084
Alignment:
| Q |
413 |
caaaccatcccatggagaatgtagaacaaacaatctcagagagattcaaacctctctttttcactgaggcaataaatggaggatatttctttggaagttc |
512 |
Q |
| |
|
||||||||||||| | ||| |||||||||| | ||||||||||||||| ||||||||||||| ||| ||||| || ||||||||||| |||||| | |
|
|
| T |
40844376 |
caaaccatcccatagtgaaagtagaacaaagtacctcagagagattcaatcctctctttttcattgatgcaatgaaaggaggatattttaatggaagccc |
40844277 |
T |
|
| Q |
513 |
tattgcaatggattgttcatcaacagatagtgtagggaaaccattccctttgtaaacattgtcagagacaatgatcctcaaccttaaatctattagtatc |
612 |
Q |
| |
|
|| ||||| || |||||||||||| || || || ||||||||||||||||||| || |||||| ||||||||| || ||||||||||||| |||| |||| |
|
|
| T |
40844276 |
tactgcaacggtttgttcatcaaccgaaagcgttgggaaaccattccctttgtgaatattgtcggagacaatgctcttcaaccttaaatcaattactatc |
40844177 |
T |
|
| Q |
613 |
tcatggctttggcc---attgatgatagcaatgataaaggctttacgagggatagttatagcacttggtttgaaagattcccatttgagaata |
702 |
Q |
| |
|
|||||||||| | | ||||||||||||||||| |||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
40844176 |
tcatggctttcgacgttattgatgatagcaatgacaaaggctttacgagggattgttataacacttggtttcgaagatacccatttgagaata |
40844084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 236 - 401
Target Start/End: Complemental strand, 40845799 - 40845634
Alignment:
| Q |
236 |
attcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagaccaagatcaacaacaattcttaatccactaat |
335 |
Q |
| |
|
|||| ||||||||| | |||||||||| |||||| | || ||||||||||||||||| |||||||| ||||||||||||||||| | | |||| |||| |
|
|
| T |
40845799 |
attctgtgttctcatccgtaggcacagcttcaataactctatcatgatactcaacaatcttcataagttcaagatcaacaacaattttaattccagtaat |
40845700 |
T |
|
| Q |
336 |
aggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttctact |
401 |
Q |
| |
|
|||||| ||||| ||||| |||| |||||||||| |||||||| | |||||||||||| ||||| |
|
|
| T |
40845699 |
aggcctaacatatatattggcagtgttttctttcattaagcagtctaacctcacagtcctactact |
40845634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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