View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_41 (Length: 368)
Name: NF17166_high_41
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_41 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 132 - 356
Target Start/End: Original strand, 26100412 - 26100634
Alignment:
| Q |
132 |
tgattgggatcaggttactaaagcttggatatataggcggaacaaagcaaatttatacaaaattttagaagatgagttggagcagttgtgtggtaaacct |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
26100412 |
tgattgggatcaggttactaaagcttggatatataggcggaacaaagcaaatttatacaaaatcttagaagatgagttggagcagttgtgtggcaaacct |
26100511 |
T |
|
| Q |
232 |
attgttctttcctaagctgttgagaatgtggtacttaatcttgatttaaaatttaaaaatgggaaatcattggacattgttgatgatcctttaacattca |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26100512 |
attgttctttcctaagctgttgagaatgtggtacttaatcttgatttaaaatttaaaaatgggaaatcattggacattgttgatgatcctttggcattca |
26100611 |
T |
|
| Q |
332 |
ggtgtgtactcagtaagcagatttt |
356 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
26100612 |
g--gtgtactcagtaagcagatttt |
26100634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 132 - 356
Target Start/End: Original strand, 25560898 - 25561120
Alignment:
| Q |
132 |
tgattgggatcaggttactaaagcttggatatataggcggaacaaagcaaatttatacaaaattttagaagatgagttggagcagttgtgtggtaaacct |
231 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| |
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| T |
25560898 |
tgattgggatcaggttactaaagcttggatatataggcggaacaaagcaaatttatacaaaatcttagaagatgagttggagcagttgtctggcaaacct |
25560997 |
T |
|
| Q |
232 |
attgttctttcctaagctgttgagaatgtggtacttaatcttgatttaaaatttaaaaatgggaaatcattggacattgttgatgatcctttaacattca |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25560998 |
attgttctttcctaagctgttgagaatgtggtacttaatcttgatttaaaatttaaaaatgggaaatcattggacattgttgatgatcctttggcattca |
25561097 |
T |
|
| Q |
332 |
ggtgtgtactcagtaagcagatttt |
356 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
25561098 |
g--gtgtactcagtaagcagatttt |
25561120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 132 - 356
Target Start/End: Original strand, 25566443 - 25566665
Alignment:
| Q |
132 |
tgattgggatcaggttactaaagcttggatatataggcggaacaaagcaaatttatacaaaattttagaagatgagttggagcagttgtgtggtaaacct |
231 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
25566443 |
tgattgggatcaggttactaaagtttggatatataggcggaataaagcaaatttatgcaaaatcttagaagatgagttggagcagttgtgtggcaaacct |
25566542 |
T |
|
| Q |
232 |
attgttctttcctaagctgttgagaatgtggtacttaatcttgatttaaaatttaaaaatgggaaatcattggacattgttgatgatcctttaacattca |
331 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25566543 |
attgttctttcctaagctgttgagaatgtggtacttaatcttgatttaaaatttaaaaatgggaaatcattggacattgttgatgatcctttggcattca |
25566642 |
T |
|
| Q |
332 |
ggtgtgtactcagtaagcagatttt |
356 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
25566643 |
g--gtgtactcagtaagcagatttt |
25566665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 132 - 356
Target Start/End: Original strand, 26000681 - 26000895
Alignment:
| Q |
132 |
tgattgggatcaggttactaaagcttggatatataggcggaacaaagcaaatttatacaaaattttagaagatgagttggagcagttgtgtggtaaacct |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
26000681 |
tgattgggatcaggttactaaagcttggatatataggcggaacaaagcaaatttatacaaaatcttagaagatgagttggagcagttgtgtggcaaacct |
26000780 |
T |
|
| Q |
232 |
attgttctttcctaagctgttgagaatgtggtacttaatcttgatttaaaatttaaaaatgggaaatcattggacattgttgatgatcctttaacattca |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26000781 |
attgttctttcctaagctgttgagaatgtggtacttaatcttgattt--------taaatgggaaatcattggacattgttgatgatcctttggcattca |
26000872 |
T |
|
| Q |
332 |
ggtgtgtactcagtaagcagatttt |
356 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
26000873 |
g--gtgtactcagtaagcagatttt |
26000895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 132 - 356
Target Start/End: Original strand, 33857426 - 33857648
Alignment:
| Q |
132 |
tgattgggatcaggttactaaagcttggatatataggcggaacaaagcaaatttatacaaaattttagaagatgagttggagcagttgtgtggtaaacct |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| |
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| T |
33857426 |
tgattgggatcaggttactaaagcttggatatataggcggaacaaagcaaatttatacaaaatcttagaagatgagttggagcagttgtctggcaaacct |
33857525 |
T |
|
| Q |
232 |
attgttctttcctaagctgttgagaatgtggtacttaatcttgatttaaaatttaaaaatgggaaatcattggacattgttgatgatcctttaacattca |
331 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33857526 |
attgttctttcctaagctgttgagaatgtagtacttaatcttgatttaaaatttaaaaatgggaaatcattggacattgttgatgatcctttggcattca |
33857625 |
T |
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| Q |
332 |
ggtgtgtactcagtaagcagatttt |
356 |
Q |
| |
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| ||| |||||| ||||||||||| |
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|
| T |
33857626 |
g--gtgaactcaggaagcagatttt |
33857648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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