View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_42 (Length: 364)
Name: NF17166_high_42
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 147 - 305
Target Start/End: Complemental strand, 45734599 - 45734441
Alignment:
| Q |
147 |
caagatttataggggtacctatctgttggcgcttttgtgaaagcgttattatatgtttgtatccaaataaaaataaaaacactgtgcaatatagttttcc |
246 |
Q |
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| T |
45734599 |
caagatttataggggtacctatctgttggcgcttttgtgaaagcgttattatatgtttgtatccaaataaaaataaaaacactgtgcaatatagttttcc |
45734500 |
T |
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| Q |
247 |
attttcatgctgtaattctttctcacactctcaacacttgttcaaaccttcttcttctc |
305 |
Q |
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| T |
45734499 |
attttcatgttgtaattctttctcacactctcaacacttgttcaaaccttcttcttctc |
45734441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 45734722 - 45734628
Alignment:
| Q |
24 |
aacataagaaattcgttggtacttgtacttatgtgaggtctatttaaacattgatgtttgctctagtctctcgttttcaaaactcaactttgcat |
118 |
Q |
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| T |
45734722 |
aacataagaaattcgttggtacttatacttatgtgaggtctatttaaacattgatgtttgctttagtctctcgttttcaaaactcaactttgcat |
45734628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 45734419 - 45734355
Alignment:
| Q |
290 |
aaaccttcttcttctctgttctcttccaacccacttgaacctaacccttctatgttctctgctcc |
354 |
Q |
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| T |
45734419 |
aaaccttcttcttctcagttctcttccaactcacttgaacctaacccttctatgttctcttctcc |
45734355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 349
Target Start/End: Complemental strand, 45727999 - 45727879
Alignment:
| Q |
232 |
gcaatatagttttccattttcatgctgtaattctttctcacactctcaacacttgttcaaac---cttcttcttctctgttctcttccaacccacttgaa |
328 |
Q |
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| T |
45727999 |
gcaatatatttttctatttccgtgttttaattgtttctcgcactctcgatactcgctcaaactaccttcttcttcatagttctcttccaactcacttgag |
45727900 |
T |
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| Q |
329 |
cctaacccttctatgttctct |
349 |
Q |
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| T |
45727899 |
cctaacccttctacgttctct |
45727879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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