View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_47 (Length: 342)
Name: NF17166_high_47
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 39507793 - 39508108
Alignment:
| Q |
18 |
cggtttacaagtcaataataaggtctgtgtttgatatcttagctagttcaagaaaattgagggcctggcttagatgaaaattttacaagattctattttc |
117 |
Q |
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| T |
39507793 |
cggtttacaagtcaataataaggtccgtgtttgatatcttagctagttcaagaaaattgagggcctggcttagatgaaaattttacaagattctattttc |
39507892 |
T |
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| Q |
118 |
cttacattaaattcggagtgtgctccactctatgtcttacattcgattgatactaacaattcttatgttgtgtcggtttatacaaggttttgtcttgact |
217 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
39507893 |
cttactttaaattcggagtgtgctccactctatgtcttacattcgattgatactaacaattcttatgttgtgtcggtctatataaggttttgtcttgact |
39507992 |
T |
|
| Q |
218 |
tcaattgcgtcccccctaatggatggtgggattggtcctccggattagtcggtctttaagctaaataccgacttttcgaagnnnnnnnntcaaaactaac |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||| |
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| T |
39507993 |
tcaattacgtcccccctaatggatggtgggattggtcctccaaattagtcggtctttaagctaaataccgattttttgaagaaaaaaaatcaaaactaac |
39508092 |
T |
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| Q |
318 |
tcctctcaagtattat |
333 |
Q |
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| T |
39508093 |
tcctctcaagtattat |
39508108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 37056528 - 37056571
Alignment:
| Q |
228 |
cccccctaatggatggtgggattggtcctccggattagtcggtc |
271 |
Q |
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| T |
37056528 |
ccccgctagtggacggtgggattggtcctccggattagtcggtc |
37056571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 28409303 - 28409245
Alignment:
| Q |
216 |
cttcaattgcgtcccccctaatggatggtgggattggtcctccggattagtcggtcttt |
274 |
Q |
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| T |
28409303 |
cttcaattgggcccccactagtggacggtgggattggtcccccgaattagtcggtcttt |
28409245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 43504749 - 43504783
Alignment:
| Q |
237 |
tggatggtgggattggtcctccggattagtcggtc |
271 |
Q |
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| T |
43504749 |
tggatggtgggattggtcccccggattagtcggtc |
43504783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 37565284 - 37565336
Alignment:
| Q |
172 |
aacaattcttatgttgtgtcggtttatacaaggttttgtcttgacttcaattg |
224 |
Q |
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| T |
37565284 |
aacaattcatatgttgggtcggttaatacaaggttttgttccgacttcaattg |
37565336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 28090642 - 28090674
Alignment:
| Q |
239 |
gatggtgggattggtcctccggattagtcggtc |
271 |
Q |
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| T |
28090642 |
gatggtgggattggtcccccggattagtcggtc |
28090674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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