View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_51 (Length: 331)
Name: NF17166_high_51
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_51 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 8997200 - 8997521
Alignment:
| Q |
1 |
tttgtaagaagtatagatacataaaagaatagaaagcaaatttagaaccactgatgctaaatttcattcacactaaaaagcttcgttataaattaaacac |
100 |
Q |
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| T |
8997200 |
tttgtaagaagtatagatacataaaagaatagaaagcaaatttagaaccactgatgctaaatttcattcacactaaaaagcttcattataaattaaacac |
8997299 |
T |
|
| Q |
101 |
ctcaaaacaaaattgggatattctgttagtatccgtatcgatgccccatgagaagaaacttgcagctacctatgtaaactaagatcctccaaggttgttc |
200 |
Q |
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| T |
8997300 |
ctcaaaacaaaattgggatattctgttagtatccgtatcgatgccccatgagaagaaacttgcagctacctatataaactaagatcctccaaggttgttc |
8997399 |
T |
|
| Q |
201 |
agtggttgttttgaccagtaaaaatcaaggaaacttatt-nnnnnnnntgtgactcaaatactaaggctacttgtctaagggttatctttatctatcatc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8997400 |
agtggttgttttgaccagtaaaaatcaaggaaacttattaaaaaaaaatgtgactcaaatactaaggctacttgtctaagggttatctttatctatcatc |
8997499 |
T |
|
| Q |
300 |
ctggtttttgcaactctctctg |
321 |
Q |
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|||||||||||||||||||||| |
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| T |
8997500 |
ctggtttttgcaactctctctg |
8997521 |
T |
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