View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_54 (Length: 328)
Name: NF17166_high_54
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_54 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 199
Target Start/End: Complemental strand, 6396180 - 6395989
Alignment:
| Q |
4 |
aggaaattaggtacaagaaggtatagtagttgtatcaagttgtttattattggaatcttccaatatgttgtatataagtttgtctttgtaattttgttga |
103 |
Q |
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| T |
6396180 |
aggaaattaggtacaagaaggtatagtagttgtatcaagttgtttattattggaatcttccaatatgttgtatat----ttgtctttgtaattttgttga |
6396085 |
T |
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| Q |
104 |
taggttgagtctgactcctcatcactatttgaagtgtgcatgtcaccacaatgaattgaagttggggcagtgtaaactcctcatgtgataatatat |
199 |
Q |
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| T |
6396084 |
taggttgagtctgactcctcatcactatttgaagtgtgcatgtcaccacaatgaattgaagttggggcagtgtaaactcctcatgtgataatatat |
6395989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 202 - 310
Target Start/End: Complemental strand, 6394748 - 6394640
Alignment:
| Q |
202 |
ttagtacaattagagttacaccatagtgataataccaagtatttttacatgaatattgctattctcctttttaaaattgtttattcccttgctccagcgg |
301 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| | ||||||||||||||||||||||||| ||||||||| ||| |
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| T |
6394748 |
ttagtacaattagagttacatcatagtgataataccaagtatttttccatgaaaattattcttctcctttttaaaattgtttattctcttgctccaacgg |
6394649 |
T |
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| Q |
302 |
aagttaact |
310 |
Q |
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| T |
6394648 |
aagttaact |
6394640 |
T |
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