View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_high_64 (Length: 309)

Name: NF17166_high_64
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_high_64
NF17166_high_64
[»] chr8 (3 HSPs)
chr8 (155-309)||(27513624-27513778)
chr8 (196-309)||(8675131-8675245)
chr8 (73-122)||(34154786-34154834)
[»] chr1 (2 HSPs)
chr1 (123-296)||(39210040-39210197)
chr1 (155-287)||(24036791-24036927)
[»] chr4 (2 HSPs)
chr4 (38-122)||(47952641-47952725)
chr4 (38-122)||(26594638-26594724)
[»] chr3 (2 HSPs)
chr3 (184-293)||(9461180-9461298)
chr3 (54-122)||(47594475-47594543)
[»] chr2 (1 HSPs)
chr2 (165-277)||(38950770-38950885)
[»] chr6 (2 HSPs)
chr6 (229-281)||(18331979-18332031)
chr6 (160-227)||(18331878-18331945)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 155 - 309
Target Start/End: Original strand, 27513624 - 27513778
Alignment:
Q  155 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 254  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  255 gcttgcagatagtttcatcaacttcccttgtattttcaaggtcttcggcaccttc 309  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27513724 gcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcaccttc 27513778  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 196 - 309
Target Start/End: Complemental strand, 8675245 - 8675131
Alignment:
Q  196 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaa-g 294  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||      
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtattctcaatc 8675146  T
Q  295 gtcttcggcaccttc 309  Q
    |||||||||||||||    
T  8675145 gtcttcggcaccttc 8675131  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 34154786 - 34154834
Alignment:
Q  73 aggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 122  Q
    ||||||||| | |||||||||||||| |||||||||| ||||||||||||    
T  34154786 aggtgtagaattgtatgttgccacat-agtgtgtcaatgtatcatctctc 34154834  T

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Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 123 - 296
Target Start/End: Complemental strand, 39210197 - 39210040
Alignment:
Q  123 ttcttgtatacatcaaatggagcctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatca 222  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  39210197 ttcttgtatacatcaaatggaacctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttc---------- 39210108  T
Q  223 aaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt 296  Q
          |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210107 ------aaaaaaatcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt 39210040  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 155 - 287
Target Start/End: Original strand, 24036791 - 24036927
Alignment:
Q  155 aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 253  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  254 ----ggcttgcagatagtttcatcaacttcccttgtat 287  Q
        |||||||||||||||||||||||||  |||||||    
T  24036890 ggatggcttgcagatagtttcatcaacttagcttgtat 24036927  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 47952641 - 47952725
Alignment:
Q  38 tatcattatttattggttttttattaggatatggaaggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 122  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47952641 tatcattatttattgtttttttattagcatatgggaggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 47952725  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 26594638 - 26594724
Alignment:
Q  38 tatcattatttattggttttttattaggatatg-ga-aggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 122  Q
    ||||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  26594638 tatcattatttattgtttttttattggtatatgagagaggtgtagagtggtatgttgccacataagtgtgtccatgtatcatctctc 26594724  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 9461298 - 9461180
Alignment:
Q  184 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 274  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  275 acttcccttgtattttcaa 293  Q
    |||||| |  |||||||||    
T  9461198 acttccttcttattttcaa 9461180  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 47594543 - 47594475
Alignment:
Q  54 ttttttattaggatatggaaggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 122  Q
    ||||||||| | || ||| ||||||||| ||||||||||||| ||| | |||||||||||||| |||||    
T  47594543 ttttttattggcatttgggaggtgtagaatggtatgttgccatataggggtgtcaacgtatcagctctc 47594475  T

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Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 165 - 277
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  165 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 258  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  259 gcagatagtttcatcaact 277  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  229 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc 281  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  160 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 227  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

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