View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_72 (Length: 290)
Name: NF17166_high_72
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_72 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 13260601 - 13260338
Alignment:
| Q |
11 |
cacagaatcaccttgtatttcattttgttgttattggaagttttaattagctgtgtgtgaaacagttaactgcttaatcacagcacttgcatgannnnnn |
110 |
Q |
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| T |
13260601 |
cacagaatcaccttgtatttcattttgttgttattggaagttttaattagctgtgtgtgatatagttaactgcttaatcagagcacttgcatgatttttt |
13260502 |
T |
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| Q |
111 |
nnnnnncaatcgtcattaatttgtgaaattgttttattaacaacaatttaggtataggaggaatgattttataatccctctatccttaatatttcagaca |
210 |
Q |
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| T |
13260501 |
atttttcaatcgtcattaatttgtgaaattgttttcttaacaacaatttaggtataggaggaatgagtttataatccctctatccttaatatttcagaca |
13260402 |
T |
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| Q |
211 |
ctgctactaaaaatgcagctacaagtggagtgaactttgaatcttcacaaaagatgagtataac |
274 |
Q |
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| T |
13260401 |
ctgctactaaaaatgcagctacaagtggagtgaactttgaatcttcacagaagatgagtataac |
13260338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 13269717 - 13269623
Alignment:
| Q |
169 |
aggaatgattttataatccctctatccttaatatttcagacactgctactaaaaatgcagctacaagtggagtgaactttgaatcttcacaaaag |
263 |
Q |
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| T |
13269717 |
aggaatgagtttataatatctctaaccttaatatttcaggcactgatactacatatgcagatacaagtcgagtgaagtttgaatgttcacaaaag |
13269623 |
T |
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