View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_high_75 (Length: 287)

Name: NF17166_high_75
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_high_75
NF17166_high_75
[»] chr4 (1 HSPs)
chr4 (12-287)||(40374847-40375131)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 40374847 - 40375131
Alignment:
Q  12 gcagaacctgtgactattttacatgttatcgttcttgcttggaaagaggatatagagaggctgttattgaat---------tccttgcccttaatgtcat 102  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  40374847 gcagaacctatgactattttacatgttatcgttcttgcttggaaagaggatatagagaggctgttattgaataagatttgttccttgcccttaatgtcat 40374946  T
Q  103 tgtttcatgctccatcacactttaagagatgaaggttatttttactaattgactggtgaataagggaaattattgaagaggaccccctacgttccaatag 202  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40374947 tgtttcatgttccatcacactttaagagatgaaggttatttgtactaattgactggcgaataagggaaattattgaagaggaccccctacgttccaatag 40375046  T
Q  203 cttggcaatgccagttttaattttcaaaattggcatttctctctttctccgttgtctccctaagatgaatatattggaatttgat 287  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40375047 tttggcaatgccagttttaattttcaaaattggcatttctctctttctccgttgtctccctaagatgaatatattggaatttgat 40375131  T

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