View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_78 (Length: 282)
Name: NF17166_high_78
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_78 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 8167551 - 8167379
Alignment:
| Q |
10 |
cgaagaatatagcatttagtaaaaccccgttccaattnnnnnnnnttatcattttttaacggttaacaaaaaattacaattttaatgggtgccttattaa |
109 |
Q |
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| T |
8167551 |
cgaaaaatatagcatttaataaaaccctgttccaattaaaaaaaattaccattttttaacggttaacaaaaaattacaattttaatgggtgccttattaa |
8167452 |
T |
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| Q |
110 |
tgatgtaagcaaaattttatttaaaaaggtaccataacaaaaataaacccagaataataacttcatataaaga |
182 |
Q |
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| T |
8167451 |
tgatgtaagcaaaattttatttaaaaaggtaccataacaaaaataaatccagaataataacttcatataaaga |
8167379 |
T |
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