View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_high_85 (Length: 267)

Name: NF17166_high_85
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_high_85
NF17166_high_85
[»] chr2 (2 HSPs)
chr2 (19-267)||(16954121-16954369)
chr2 (19-267)||(17023712-17023960)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 16954369 - 16954121
Alignment:
Q  19 gaaattccattatgttgcaaataattacatcaaatactactgatataggaaacttcttatatcgcgacatcgatatatagattagataaaccttgcttgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16954369 gaaattccattatgttgcaaataattacatcaaatactactgatataggaaacttcttatatcgcgacatcgatatatagattagataaaccttgcttgt 16954270  T
Q  119 ataagatttgttcatgattaagctcttttatggcttaggaactcatcctcgatataacttcgcattaacaatacaaatatgtttttgtaacagtcacttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16954269 ataagatttgttcatgattaagctcttttatggcttaggaactcatcctcgatataacttcgcattaacaatacaaatatgtttttgtaacagtcacttt 16954170  T
Q  219 gcaatgcctgtgggattcgacaaagaaaagcgagacgcgcccttgcagc 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16954169 gcaatgcctgtgggattcgacaaagaaaagcgagacgcgcccttgcagc 16954121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 17023960 - 17023712
Alignment:
Q  19 gaaattccattatgttgcaaataattacatcaaatactactgatataggaaacttcttatatcgcgacatcgatatatagattagataaaccttgcttgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17023960 gaaattccattatgttgcaaataattacatcaaatactactgatataggaaacttcttatatcgcgacatcgatatatagattagataaaccttgcttgt 17023861  T
Q  119 ataagatttgttcatgattaagctcttttatggcttaggaactcatcctcgatataacttcgcattaacaatacaaatatgtttttgtaacagtcacttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17023860 ataagatttgttcatgattaagctcttttatggcttaggaactcatcctcgatataacttcgcattaacaatacaaatatgtttttgtaacagtcacttt 17023761  T
Q  219 gcaatgcctgtgggattcgacaaagaaaagcgagacgcgcccttgcagc 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17023760 gcaatgcctgtgggattcgacaaagaaaagcgagacgcgcccttgcagc 17023712  T

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