View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_9 (Length: 652)
Name: NF17166_high_9
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 22 - 626
Target Start/End: Original strand, 49717308 - 49717913
Alignment:
| Q |
22 |
tatgtctgcaaacaagttggttagttttcttcattgaatgcttaggaaatgaacaatgttaataatctgcaattcacattttgaataagtaaaatcttac |
121 |
Q |
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| T |
49717308 |
tatgtctgcaaacaagttggttagttttcttcattgaatgcttaggaaaagaacaatgttaataatctgcaattcacatt--gaataagtaaaatcttac |
49717405 |
T |
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| Q |
122 |
ttgatcaccgacatcccacaaaatcttgtcaactggagcatgaaaaacatgatgtattgcaactgtgaggtccaccacagccatactaggattcagtaat |
221 |
Q |
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| T |
49717406 |
ttgatcaccgacatcccacaaaatcttgtcaactggagcatgaaaaacatgatgtattgcaactgtgaggtccaccacagccatactaggattcagtaat |
49717505 |
T |
|
| Q |
222 |
atttgcgtgctcgacaaaatagaagacaactctaaacggatttcagcagctagttgtttcaattcttgctgagaaaggttcttcaagcaaagagggtttt |
321 |
Q |
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| T |
49717506 |
atttgcgtgcccgacaaaatagaagacaactctaaacggatttcagcagctagttgtttcaactcttgctgagaaaggttcttcaagcaaagagggtttt |
49717605 |
T |
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| Q |
322 |
gaactgtgtcaagaatgggtgttggaactttctcccagtagaaatcatcaatatcaggtcgtgaacatactcgatgaattaagattct---agaagaaga |
418 |
Q |
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| T |
49717606 |
gaactgtgtcaagaatgggtgttggaactttctcccagtagaaatcatcaatatcaggtcgtgaacatactcgatgaattaagattctagaagaagaaga |
49717705 |
T |
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| Q |
419 |
ataggtgattctggaaagggggaattgggatattgagcaatccaatctgcgagttagggtttgggaatggaaagggattacaaatgggtatctagcacaa |
518 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49717706 |
atatgtgattctggaaagggggaattgggagattgagcaatccaatctgcgagttagggtttgggaatggaaagggattacaaatgggtatctagcacaa |
49717805 |
T |
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| Q |
519 |
acagtacccatcattactcaaatcttcaaacttcacaattcacaaaaaatatcctagtattattttgtttcaaatgaatcaatagaccgtatgagactgc |
618 |
Q |
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| T |
49717806 |
acagtacccatcattactcaaatcttcaaacttcacaattcacaaaaaatatcctagtattattttgtttcaaatgaatcaattgaccgtatgagactac |
49717905 |
T |
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| Q |
619 |
aatttggc |
626 |
Q |
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| T |
49717906 |
aatttggc |
49717913 |
T |
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