View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17166_high_90 (Length: 253)
Name: NF17166_high_90
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_90 |
 |  |
|
| [»] chr6 (23 HSPs) |
 |  |
|
| [»] scaffold0294 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 23)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 5065771 - 5065532
Alignment:
| Q |
16 |
ctgtaactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttc |
115 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
5065771 |
ctgtaacttacaattgcgaaggttcttctgtaacttttgaagtccctcaaatgaaagggcgtatgttgaagacaataatgatatgcattgtctattcttc |
5065672 |
T |
 |
| Q |
116 |
aaccccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccata--agagatgcgttaatttcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||| ||| |
|
|
| T |
5065671 |
aaccccggataacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctataagagagaggcgttaatctcc |
5065572 |
T |
 |
| Q |
214 |
tttgaagacgaggaggggcagagagtagtgtcaagtattg |
253 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
5065571 |
tttgaagatgaggaggggcagagagtagtatcaagtattg |
5065532 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 5253522 - 5253697
Alignment:
| Q |
16 |
ctgtaactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||||| || |||||||| |||| |||| |||||||||| ||||| |
|
|
| T |
5253522 |
ctgtaactttcaattgtgaaggttcttctgtaccttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttc |
5253621 |
T |
 |
| Q |
116 |
aaccccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctc |
191 |
Q |
| |
|
|||||| ||||||| | ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5253622 |
aaccccagataacacaacatctgatggcttcacaaatttgttggtaaaaaattacacaaaggccaccattcagctc |
5253697 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 5346005 - 5346176
Alignment:
| Q |
19 |
taactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaac |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| || |||||| |||||||||| || |||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
5346005 |
taactttcaattctgaaggttcttctgttacttttgaagttcctcaagtggaagggcgaatgttgaagacaataacgatatgtgttgtctattcttcaac |
5346104 |
T |
 |
| Q |
119 |
cccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagct |
190 |
Q |
| |
|
||||||| ||| ||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
5346105 |
ttcggataatataacatctgatggcctgagaaacttgttggtgaaaaattacacaaaggctaccattcagct |
5346176 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 5126934 - 5126714
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
||||||||||| ||||||||||| || |||||| || ||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5126934 |
gaaggttcttcggtaacttttgaagtacctcaagtgaaagggcgtacgttgaagaaagtaatgatatgcattgtctattcttcaaccttggataacataa |
5126835 |
T |
 |
| Q |
133 |
catctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccata--agagatgcgttaatttcctttgaagacgaggaggg |
230 |
Q |
| |
|
|||| |||||||| |||| ||||||||| ||||||||||| |||||||||||||| ||| ||| ||||| || | | ||||||||||| |||||||| |
|
|
| T |
5126834 |
catcagatggccttacaagcttgttggtgaaaaattacacgaaggccaccattcaactctataagagagaggcagcagtctcctttgaagatgaggaggg |
5126735 |
T |
 |
| Q |
231 |
gcagagagtagtgtcaagtat |
251 |
Q |
| |
|
| |||||||||| |||||||| |
|
|
| T |
5126734 |
ggagagagtagtatcaagtat |
5126714 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 5177715 - 5177949
Alignment:
| Q |
19 |
taactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaac |
118 |
Q |
| |
|
|||| |||||||| ||||||||||| |||| ||||| ||||||||| |||||||| ||| || ||||| || ||||||||||||| |||||||||||| |
|
|
| T |
5177715 |
taaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggtgcactttaaagacaatgatgatatgcattgactattcttcaac |
5177814 |
T |
 |
| Q |
119 |
cccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccata--agagatgcgttaatttccttt |
216 |
Q |
| |
|
|| |||||| ||| |||| ||||||| ||||||||||||| || ||||||||||| |||||||||||||| ||| ||||| || ||| |||||| |
|
|
| T |
5177815 |
cctggataatataacatcaaatggccttgcaaacttgttggttaagaattacacaaaagccaccattcagctttataagagagaggcattagcctccttt |
5177914 |
T |
 |
| Q |
217 |
gaagacgaggaggggcagagagtagtgtcaagtat |
251 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||| |
|
|
| T |
5177915 |
gaagatgaagagggtcagagagtagtatcaagtat |
5177949 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 5689222 - 5688988
Alignment:
| Q |
19 |
taactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaac |
118 |
Q |
| |
|
|||| |||||||| ||||||||||| |||| ||||| ||||||||| |||||||||||| || ||||| | ||||||||||| | ||||||| |||| |
|
|
| T |
5689222 |
taaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggcgcactttaaagacattgatgatatgcatcgactattctacaac |
5689123 |
T |
 |
| Q |
119 |
cccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttccttt |
216 |
Q |
| |
|
|| |||||||||| |||| ||||||| ||||||||||||| || ||||||||||| |||||||||||||| |||||| || || ||| | |||||| |
|
|
| T |
5689122 |
cctggataacataacatcaaatggccttgcaaacttgttggtgaagaattacacaaaagccaccattcagctttataagagcgaggcattagtctccttt |
5689023 |
T |
 |
| Q |
217 |
gaagacgaggaggggcagagagtagtgtcaagtat |
251 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||| |
|
|
| T |
5689022 |
gaagatgaagagggacagagagtagtatcaagtat |
5688988 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 5242831 - 5242650
Alignment:
| Q |
19 |
taactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaac |
118 |
Q |
| |
|
|||| ||| ||| ||||||||||||||| |||||||| ||||||||| |||||||||| || |||||||| |||| |||||| ||||||||||||||| |
|
|
| T |
5242831 |
taaccttcgattctgaaggttcttctgttacttttgaagtccctcaagtggaagggcgaatgttgaagacaataacgatatgtgctgtctattcttcaac |
5242732 |
T |
 |
| Q |
119 |
cccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga |
200 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
5242731 |
ttcggatagtataacatctgatggccttggaaacttgttagtgaaaaattacacaaaggccaccattcagctctacaagaga |
5242650 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 5279540 - 5279774
Alignment:
| Q |
19 |
taactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaac |
118 |
Q |
| |
|
|||| |||||||| ||||||||||| |||| ||||| ||||||||| |||||||| ||| || ||||| | ||||||||||||| |||||||||||| |
|
|
| T |
5279540 |
taaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggtgcactttaaagacattgatgatatgcattgactattcttcaac |
5279639 |
T |
 |
| Q |
119 |
cccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccata--agagatgcgttaatttccttt |
216 |
Q |
| |
|
|| |||||| ||| |||| ||||||| ||||||||||||| || ||||||||||| |||||||||||||| ||| ||||| || ||| |||||| |
|
|
| T |
5279640 |
cctggataatataacatcaaatggccttgcaaacttgttggtgaagaattacacaaaagccaccattcagctttataagagagaggcattagcctccttt |
5279739 |
T |
 |
| Q |
217 |
gaagacgaggaggggcagagagtagtgtcaagtat |
251 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||| |
|
|
| T |
5279740 |
gaagatgaagagggtcagagagtagtatcaagtat |
5279774 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 5136221 - 5136066
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| |||||||||| | |||||||| |||||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
5136221 |
gaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaagac---aatgatgtgcattgtctatacttcaaccccagataacataa |
5136125 |
T |
 |
| Q |
133 |
catctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctc |
191 |
Q |
| |
|
|||| |||||| | ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5136124 |
catcaagtggccttaaaaatgtgttggtaaaaaattacacaaaggccaccattcagctc |
5136066 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 5353166 - 5352948
Alignment:
| Q |
32 |
tgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacata |
131 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||| | |||||||| |||||| |||||| ||||| | ||||||| |||||||| |
|
|
| T |
5353166 |
tgaaggttcttctgtaacttttcatgtccctctggtggaagggcgtaacttgaagac---aatgatgtgcattatctatacgtcaacccaaaataacata |
5353070 |
T |
 |
| Q |
132 |
gcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggagg |
229 |
Q |
| |
|
| || ||||||| | ||| ||||| ||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
5353069 |
acttcatatggccttaaaaatgtgttgctaaaaaattacacaaaggctaccattcagctttataagagagaggcattaatttcctttgaagatgaggagg |
5352970 |
T |
 |
| Q |
230 |
ggcagagagtagtgtcaagtat |
251 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
5352969 |
ggcagagagtagtatcaagtat |
5352948 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 5101120 - 5100903
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| |||||||||| | |||||||| |||||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
5101120 |
gaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaagac---aatgatgtgcattgtctatacttcaaccccagataacataa |
5101024 |
T |
 |
| Q |
133 |
catctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggg |
230 |
Q |
| |
|
|||| |||||| | ||| |||| || |||||||||||||||||||||||||||||| |||||| || || ||| | ||||||||||| ||||||| |
|
|
| T |
5101023 |
catcaagtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggaggc |
5100924 |
T |
 |
| Q |
231 |
gcagagagtagtgtcaagtat |
251 |
Q |
| |
|
| ||| ||||| |||||||| |
|
|
| T |
5100923 |
tctgagggtagtatcaagtat |
5100903 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 5438998 - 5439167
Alignment:
| Q |
27 |
aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata |
126 |
Q |
| |
|
|||| |||||||||||||||||||||| | ||||||||| |||||||||| | |||| | | | |||| |||||||||||||||||||| ||||||| |
|
|
| T |
5438998 |
aattctgaaggttcttctgtaacttttcaagtccctcaagtggaagggcgtaatttgatgtc---attgatgtgcattgtctattcttcaactccggata |
5439094 |
T |
 |
| Q |
127 |
acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagag |
199 |
Q |
| |
|
||||| |||| ||| |||| | ||| | ||||| | |||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
5439095 |
acataacatcagatagccttataaatgtattggtgataaatcacacaaaggccaccattcagctctataagag |
5439167 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 5448596 - 5448819
Alignment:
| Q |
27 |
aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata |
126 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||| |||||| ||| ||||| | | | |||| |||||||||||| |||||||||| |||| |
|
|
| T |
5448596 |
aattctgaaggttcttctgtaacttttgaagtccctcaagtggaagagcgtcaattgacgtc---attgatgtgcattgtctatacttcaaccccagata |
5448692 |
T |
 |
| Q |
127 |
acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacga |
224 |
Q |
| |
|
| || ||||| |||||| | ||| ||||||| ||||||||||||||||| |||||||| || |||||| || | ||| ||||||||||||| | |
|
|
| T |
5448693 |
atgtaacatctagtggccttaaaaatgtgttggtgaaaaattacacaaaggctaccattcaaatctataagagtgagacattagtttcctttgaagataa |
5448792 |
T |
 |
| Q |
225 |
ggaggggcagagagtagtgtcaagtat |
251 |
Q |
| |
|
|||||||||||| |||| |||||||| |
|
|
| T |
5448793 |
ggaggggcagaggttagtatcaagtat |
5448819 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 5398042 - 5398256
Alignment:
| Q |
36 |
ggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatagcat |
135 |
Q |
| |
|
||||||||| |||||||||| || ||||| |||||||||| | |||||||| |||||| |||||||| ||| ||||||| | |||||| || ||| |
|
|
| T |
5398042 |
ggttcttctttaacttttgaagttcctcatgtggaagggcgtaacttgaagac---aatgatgtgcattgtgtatacttcaactctggataatgtaacat |
5398138 |
T |
 |
| Q |
136 |
ctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggggca |
233 |
Q |
| |
|
|| |||||| | |||| |||| || | |||||||||||||||||||||||||||| |||||| || |||||| | ||||||||| | || |||||||| |
|
|
| T |
5398139 |
ctagtggccttaaaaacatgttagtgataaattacacaaaggccaccattcagctctataagagtgaggcgttattctcctttgaacatgaagaggggca |
5398238 |
T |
 |
| Q |
234 |
gagagtagtgtcaagtat |
251 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
5398239 |
aagggtagtatcaagtat |
5398256 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 251
Target Start/End: Original strand, 5351393 - 5351610
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
|||| ||||||||| | ||||| || |||||| |||||||||| |||||||| |||||| ||||| |||||| |||||||||| | |||| || |
|
|
| T |
5351393 |
gaagtttcttctgtgaaatttgaagttcctcaagtggaagggcgtgacttgaagac---aatgatgtgcatagtctatacttcaacccctggtaacgtaa |
5351489 |
T |
 |
| Q |
133 |
catctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggg |
230 |
Q |
| |
|
|||| |||||| | |||| |||| || ||||||||||||||||||||||||| |||| |||||| || || ||| ||||||||||||| |||||||| |
|
|
| T |
5351490 |
catcaagtggccttaaaaacatgttagtgaaaaattacacaaaggccaccattcggctctataagagtgaggcattagtttcctttgaagatgaggaggg |
5351589 |
T |
 |
| Q |
231 |
gcagagagtagtgtcaagtat |
251 |
Q |
| |
|
|||||| |||| |||||||| |
|
|
| T |
5351590 |
gcagaggttagtatcaagtat |
5351610 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 200
Target Start/End: Complemental strand, 5072966 - 5072820
Alignment:
| Q |
51 |
tttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatagcatctgatggcctcacaa |
150 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||| | || |||| ||| ||| || ||||| | || |
|
|
| T |
5072966 |
tttgaagtccctcaagtggaagggcgcatattgaagac---aatgatatgcgttgtctattcttcaccaccaaataatgtagtatcagacggccttaaaa |
5072870 |
T |
 |
| Q |
151 |
acttgttggtaaaaaattacacaaaggccaccattcagctccataagaga |
200 |
Q |
| |
|
||||| |||| ||||||||||| || ||||||||||| || |||||||| |
|
|
| T |
5072869 |
acttgatggtgaaaaattacactaaagccaccattcaactatataagaga |
5072820 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 5156321 - 5156100
Alignment:
| Q |
27 |
aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata |
126 |
Q |
| |
|
|||| ||||||||||||||| | ||||| || |||||| |||||||||| | |||||||| |||||| |||||||||||| |||||||||| |||| |
|
|
| T |
5156321 |
aattctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagac---aatgatgtgcattgtctatacttcaaccccagata |
5156225 |
T |
 |
| Q |
127 |
acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacga |
224 |
Q |
| |
|
| || ||| | |||||| | |||| |||| | ||||||||||||||||||||||||||||| |||||| || || || ||||||||||| || |
|
|
| T |
5156224 |
atgtaacatgtagtggccttaaaaacatgttattgaaaaattacacaaaggccaccattcagctttataagagtgaggcattggcctcctttgaagatga |
5156125 |
T |
 |
| Q |
225 |
ggaggggcagagagtagtgtcaagt |
249 |
Q |
| |
|
||||||||||| ||||| |||||| |
|
|
| T |
5156124 |
agaggggcagagggtagtatcaagt |
5156100 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 249
Target Start/End: Original strand, 5372089 - 5372305
Alignment:
| Q |
32 |
tgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacata |
131 |
Q |
| |
|
||||||||||||||| | ||||| || |||||| |||||||||| | |||||||| || ||| |||| ||||| | ||||||| |||||||| || |
|
|
| T |
5372089 |
tgaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaattatg---tgcaatgtctgtacttcaactccggataatgta |
5372185 |
T |
 |
| Q |
132 |
gcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggagg |
229 |
Q |
| |
|
||||| |||||| | |||| |||| | ||||||||||||||||||||||||||||| |||||| || || ||| | ||||||||||| || |||| |
|
|
| T |
5372186 |
acatctagtggccttaaaaacatgttattgaaaaattacacaaaggccaccattcagctttataagagtgaagcattagtctcctttgaagatgaagagg |
5372285 |
T |
 |
| Q |
230 |
ggcagagagtagtgtcaagt |
249 |
Q |
| |
|
||||||| ||||| |||||| |
|
|
| T |
5372286 |
ggcagagggtagtatcaagt |
5372305 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 200
Target Start/End: Complemental strand, 23127613 - 23127448
Alignment:
| Q |
32 |
tgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacata |
131 |
Q |
| |
|
||||||||||||||||| |||||| | |||||| ||||||||| | ||||||| |||||| || ||||| || |||||||||| |||||||| |
|
|
| T |
23127613 |
tgaaggttcttctgtaagttttgaagctcctcaagtggaagggcataacgtgaagacaataatg---tgtgttgtcaatacttcaaccccagataacatt |
23127517 |
T |
 |
| Q |
132 |
gcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga |
200 |
Q |
| |
|
| || |||||| | | |||| |||||||||||||||||||||||| ||||||||| || |||||||| |
|
|
| T |
23127516 |
acctcggatggcgttaaaaacgtgttggtaaaaaattacacaaagggtaccattcagatctataagaga |
23127448 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 5283514 - 5283429
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaacccc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| | | |||||| | |||||| |||||||||||| |||||||||| |
|
|
| T |
5283514 |
gaaggttcttctgtaacttttgatgtccctcaagttgaagggtgtaacttgaagtc---aatgatgtgcattgtctatacttcaacccc |
5283429 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 5098203 - 5098367
Alignment:
| Q |
32 |
tgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacata |
131 |
Q |
| |
|
|||||||||||| ||||||||| | || || ||| ||||||| || | ||||| || |||||| |||||||||||| |||||||||| | |||||| |
|
|
| T |
5098203 |
tgaaggttcttcggtaacttttcaagttccccaagtggaaggccgtagcttgaaaac---aatgatgtgcattgtctatacttcaaccccagctaacatg |
5098299 |
T |
 |
| Q |
132 |
gcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagag |
199 |
Q |
| |
|
||| |||||| | |||| |||| || ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
5098300 |
atatcaagtggccttaaaaacatgttagtgaaaaaccacacaaaggccaccattcagctctataagag |
5098367 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 248
Target Start/End: Complemental strand, 5180972 - 5180862
Alignment:
| Q |
140 |
tggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggggcagaga |
237 |
Q |
| |
|
|||||| | |||| |||| || ||||||||||||||||| |||||||||||| |||||| ||| ||||| | || |||||||| || ||||| ||||| |
|
|
| T |
5180972 |
tggccttaaaaacatgttagttaaaaattacacaaaggctaccattcagctctataagagtgatacgttagtctcttttgaagatgaagagggtcagagg |
5180873 |
T |
 |
| Q |
238 |
gtagtgtcaag |
248 |
Q |
| |
|
||||| ||||| |
|
|
| T |
5180872 |
gtagtatcaag |
5180862 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 2938896 - 2939067
Alignment:
| Q |
27 |
aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctatt--cttcaaccccgga |
124 |
Q |
| |
|
|||| |||| |||||||||| | ||||| || |||||| |||||||||| | |||||||| |||||| |||||||||||| ||| |||||| || |
|
|
| T |
2938896 |
aattctgaatgttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagac---aatgatgtgcattgtctatatacttaaaccccaga |
2938992 |
T |
 |
| Q |
125 |
taacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagag |
199 |
Q |
| |
|
||| || ||||| |||||| | |||| || | | |||||||| | ||||||||||||||||||| ||||||| |
|
|
| T |
2938993 |
taatgtaacatctagtggccttaaaaacatgatattgaaaaattatataaaggccaccattcagctctataagag |
2939067 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 22583601 - 22583437
Alignment:
| Q |
24 |
ttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccgg |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||||| | || ||||||| || |||||| | |||||||| ||||||||||||||||||||||||| |
|
|
| T |
22583601 |
ttcaattgccaaggttcttctgtaacttttaaagtccctgtagtgaaagggcgtatgttgaagtcaataatgatctgcattgtctattcttcaaccccgg |
22583502 |
T |
 |
| Q |
124 |
ataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcag |
188 |
Q |
| |
|
|||||||| ||| ||||||| ||| ||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
22583501 |
ataacataagatccgatggccctacagccttgttggtgaaaaatcatacaaaggccaccattcag |
22583437 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 36213237 - 36213006
Alignment:
| Q |
19 |
taactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaac |
118 |
Q |
| |
|
|||| |||||||| ||||||||||||||| |||||||||||||| | |||| || || | || ||||| |||||| || ||||||||||||||||| |
|
|
| T |
36213237 |
taaccttcaattgcaaaggttcttctgtaatttttgatgtccctcgagtggatggacgtaacttaaagacaataatg---tgtattgtctattcttcaac |
36213141 |
T |
 |
| Q |
119 |
cccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttccttt |
216 |
Q |
| |
|
|| || ||||||||||| ||||| || | |||| || ||||||||||| |||||||||| ||||||||| || |||||||| || ||| | || ||| |
|
|
| T |
36213140 |
tccagaaaacatagcatcagatggacttaaaaacgtgatggtaaaaaatcacacaaaggctaccattcagatctataagagagaggcattagtctcattt |
36213041 |
T |
 |
| Q |
217 |
gaagacgaggaggggcagagagtagtgtcaagtat |
251 |
Q |
| |
|
||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
36213040 |
gaagatgaggaggggcagagattagtatcaagtat |
36213006 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 47985701 - 47985478
Alignment:
| Q |
27 |
aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata |
126 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||| ||||| ||| | || ||||| |||||| |||||||||||| |||||||| | ||| |
|
|
| T |
47985701 |
aattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagac---aatgatgtgcattgtctatacttcaacctcagatg |
47985605 |
T |
 |
| Q |
127 |
acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacga |
224 |
Q |
| |
|
||||| |||| |||||||| | |||| |||| || | |||| |||||| |||| |||||| ||| |||||| || | ||||| ||||||| ||| || |
|
|
| T |
47985604 |
acataacatcagatggccttaaaaacgtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatga |
47985505 |
T |
 |
| Q |
225 |
ggaggggcagagagtagtgtcaagtat |
251 |
Q |
| |
|
||||||| |||||||||| |||||||| |
|
|
| T |
47985504 |
ggagggggagagagtagtatcaagtat |
47985478 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 47994988 - 47994765
Alignment:
| Q |
27 |
aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata |
126 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||| ||||| ||| | || ||||| |||||| |||||||||||| |||||||| | ||| |
|
|
| T |
47994988 |
aattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagac---aatgatgtgcattgtctatacttcaacctcagatg |
47994892 |
T |
 |
| Q |
127 |
acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacga |
224 |
Q |
| |
|
||||| |||| |||||||| | |||| |||| || | |||| |||||| |||| |||||| ||| |||||| || | ||||| ||||||| ||| || |
|
|
| T |
47994891 |
acataacatcagatggccttaaaaacgtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatga |
47994792 |
T |
 |
| Q |
225 |
ggaggggcagagagtagtgtcaagtat |
251 |
Q |
| |
|
||||||| |||||||||| |||||||| |
|
|
| T |
47994791 |
ggagggggagagagtagtatcaagtat |
47994765 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 48004275 - 48004052
Alignment:
| Q |
27 |
aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata |
126 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||| ||||| ||| | || ||||| |||||| |||||||||||| |||||||| | ||| |
|
|
| T |
48004275 |
aattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagac---aatgatgtgcattgtctatacttcaacctcagatg |
48004179 |
T |
 |
| Q |
127 |
acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacga |
224 |
Q |
| |
|
||||| |||| |||||||| | |||| |||| || | |||| |||||| |||| |||||| ||| |||||| || | ||||| ||||||| ||| || |
|
|
| T |
48004178 |
acataacatcagatggccttaaaaacgtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatga |
48004079 |
T |
 |
| Q |
225 |
ggaggggcagagagtagtgtcaagtat |
251 |
Q |
| |
|
||||||| |||||||||| |||||||| |
|
|
| T |
48004078 |
ggagggggagagagtagtatcaagtat |
48004052 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 48013560 - 48013337
Alignment:
| Q |
27 |
aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata |
126 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||| ||||| ||| | || ||||| |||||| |||||||||||| |||||||| | ||| |
|
|
| T |
48013560 |
aattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagac---aatgatgtgcattgtctatacttcaacctcagatg |
48013464 |
T |
 |
| Q |
127 |
acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacga |
224 |
Q |
| |
|
||||| |||| |||||||| | |||| |||| || | |||| |||||| |||| |||||| ||| |||||| || | ||||| ||||||| ||| || |
|
|
| T |
48013463 |
acataacatcagatggccttaaaaacgtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatga |
48013364 |
T |
 |
| Q |
225 |
ggaggggcagagagtagtgtcaagtat |
251 |
Q |
| |
|
||||||| |||||||||| |||||||| |
|
|
| T |
48013363 |
ggagggggagagagtagtatcaagtat |
48013337 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 4319615 - 4319440
Alignment:
| Q |
22 |
ctttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaacccc |
121 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| ||||||||| ||||||| || | |||||||| |||||| ||||||||||||||||||| ||| |
|
|
| T |
4319615 |
ctttcaattcagaaggttcttctgtaatttttgaagtccctcaagtggaaggacgtagcttgaagacaataatg---tgcattgtctattcttcaagccc |
4319519 |
T |
 |
| Q |
122 |
ggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga |
200 |
Q |
| |
|
| ||||| |||| |||||||| ||| |||| || | |||| |||||||| |||||||||| ||| |||||||| |
|
|
| T |
4319518 |
atacgacataacatcagatggccttgaaaatgtgttagtgataaatcacacaaagaccaccattcaactctataagaga |
4319440 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 4362546 - 4362709
Alignment:
| Q |
34 |
aaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatagc |
133 |
Q |
| |
|
|||||| |||||||| |||||| ||||||||| ||||||| | | |||||||| |||||| ||||||||||||||||||| ||| || ||||| | |
|
|
| T |
4362546 |
aaggttattctgtaatttttgaagtccctcaagtggaaggatgtagcttgaagacaataatg---tgcattgtctattcttcaagcccatatgacataac |
4362642 |
T |
 |
| Q |
134 |
atctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga |
200 |
Q |
| |
|
||| |||||||| | ||| ||||||| | |||| |||||||| |||||||||| ||| |||||||| |
|
|
| T |
4362643 |
atcagatggccttagaaatgtgttggtgataaatcacacaaagaccaccattcaactctataagaga |
4362709 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 4336896 - 4337059
Alignment:
| Q |
34 |
aaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatagc |
133 |
Q |
| |
|
|||||| |||||||| |||||| |||||||| ||||||| || | |||||||| |||||| ||||||||||||||||||| ||| || ||||| | |
|
|
| T |
4336896 |
aaggttattctgtaaattttgaagtccctcatgtggaaggacgtagcttgaagac---aatgatgtgcattgtctattcttcaagcccaaatgacataac |
4336992 |
T |
 |
| Q |
134 |
atctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga |
200 |
Q |
| |
|
||| |||||||| ||| ||||||| | |||| |||||||| |||||||||| ||| ||||||| |
|
|
| T |
4336993 |
atcagatggccttcaaaatgtgttggtgataaatcacacaaagaccaccattcaactctttaagaga |
4337059 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 25568954 - 25569050
Alignment:
| Q |
157 |
tggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtat |
251 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||||| || | |||||| || ||| ||||||||||| ||||||||||||| | |||||| |||||||| |
|
|
| T |
25568954 |
tggtgaaaaattacaccaagtccaccattcaggtctacaagagagaggcattagtttcctttgaaaacgaggaggggcatatagtagtatcaagtat |
25569050 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 4122929 - 4122782
Alignment:
| Q |
50 |
ttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatagcatctgatggcctcaca |
149 |
Q |
| |
|
|||||| ||||||||| ||||||| || | |||||||| |||||| |||||||||||||| |||| ||| || ||||||||| | |||||| | |
|
|
| T |
4122929 |
ttttgaagtccctcaagtggaaggacgtagcttgaagac---aatgatgtgcattgtctattcatcaagcccaaatggcatagcatcagttggccttcaa |
4122833 |
T |
 |
| Q |
150 |
aacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga |
200 |
Q |
| |
|
|| ||||||| | |||| |||||||| |||||||||| ||| |||||||| |
|
|
| T |
4122832 |
aatgtgttggtgataaatcacacaaagaccaccattcaactctataagaga |
4122782 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 4346350 - 4346520
Alignment:
| Q |
34 |
aaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacata-- |
131 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||| ||||||| | | |||||||| |||||| ||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
4346350 |
aaggttattctgtaatctttgaagtccctcaagtggaaggacatagcttgaagacaataatg---tgcattgtctattcttcaagcccagatgacataac |
4346446 |
T |
 |
| Q |
132 |
-----gcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga |
200 |
Q |
| |
|
|||| |||||||| | ||| ||||||| | |||| |||||||| |||||||||| ||| |||||||| |
|
|
| T |
4346447 |
atcagacatcagatggccttaaaaatgtgttggtgataaatcacacaaagaccaccattcaactctataagaga |
4346520 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 8104 - 8016
Alignment:
| Q |
111 |
tcttcaaccccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagag |
199 |
Q |
| |
|
|||||||| ||||||||||| || | ||||| || | ||| |||| || ||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
8104 |
tcttcaactgcggataacataacaccagatggtcttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagatctataagag |
8016 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 8185 - 8137
Alignment:
| Q |
24 |
ttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaag |
72 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||| ||||||| |||||| |
|
|
| T |
8185 |
ttcaattgtgatggttcttctgtaatttttaatgcccctcaagtggaag |
8137 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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