View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_high_90 (Length: 253)

Name: NF17166_high_90
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_high_90
NF17166_high_90
[»] chr6 (23 HSPs)
chr6 (16-253)||(5065532-5065771)
chr6 (16-191)||(5253522-5253697)
chr6 (19-190)||(5346005-5346176)
chr6 (33-251)||(5126714-5126934)
chr6 (19-251)||(5177715-5177949)
chr6 (19-251)||(5688988-5689222)
chr6 (19-200)||(5242650-5242831)
chr6 (19-251)||(5279540-5279774)
chr6 (33-191)||(5136066-5136221)
chr6 (32-251)||(5352948-5353166)
chr6 (33-251)||(5100903-5101120)
chr6 (27-199)||(5438998-5439167)
chr6 (27-251)||(5448596-5448819)
chr6 (36-251)||(5398042-5398256)
chr6 (33-251)||(5351393-5351610)
chr6 (51-200)||(5072820-5072966)
chr6 (27-249)||(5156100-5156321)
chr6 (32-249)||(5372089-5372305)
chr6 (32-200)||(23127448-23127613)
chr6 (33-121)||(5283429-5283514)
chr6 (32-199)||(5098203-5098367)
chr6 (140-248)||(5180862-5180972)
chr6 (27-199)||(2938896-2939067)
[»] chr2 (1 HSPs)
chr2 (24-188)||(22583437-22583601)
[»] chr7 (1 HSPs)
chr7 (19-251)||(36213006-36213237)
[»] chr3 (4 HSPs)
chr3 (27-251)||(47985478-47985701)
chr3 (27-251)||(47994765-47994988)
chr3 (27-251)||(48004052-48004275)
chr3 (27-251)||(48013337-48013560)
[»] chr4 (6 HSPs)
chr4 (22-200)||(4319440-4319615)
chr4 (34-200)||(4362546-4362709)
chr4 (34-200)||(4336896-4337059)
chr4 (157-251)||(25568954-25569050)
chr4 (50-200)||(4122782-4122929)
chr4 (34-200)||(4346350-4346520)
[»] scaffold0294 (2 HSPs)
scaffold0294 (111-199)||(8016-8104)
scaffold0294 (24-72)||(8137-8185)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 5065771 - 5065532
Alignment:
16 ctgtaactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttc 115  Q
    ||||||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||||    
5065771 ctgtaacttacaattgcgaaggttcttctgtaacttttgaagtccctcaaatgaaagggcgtatgttgaagacaataatgatatgcattgtctattcttc 5065672  T
116 aaccccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccata--agagatgcgttaatttcc 213  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||| |||  ||||| |||||||| |||    
5065671 aaccccggataacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctataagagagaggcgttaatctcc 5065572  T
214 tttgaagacgaggaggggcagagagtagtgtcaagtattg 253  Q
    |||||||| |||||||||||||||||||| ||||||||||    
5065571 tttgaagatgaggaggggcagagagtagtatcaagtattg 5065532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 5253522 - 5253697
Alignment:
16 ctgtaactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttc 115  Q
    |||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||||| || |||||||| |||| |||| |||||||||| |||||    
5253522 ctgtaactttcaattgtgaaggttcttctgtaccttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtctaatcttc 5253621  T
116 aaccccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctc 191  Q
    |||||| ||||||| | ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
5253622 aaccccagataacacaacatctgatggcttcacaaatttgttggtaaaaaattacacaaaggccaccattcagctc 5253697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 5346005 - 5346176
Alignment:
19 taactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaac 118  Q
    |||||||||||| ||||||||||||||| |||||||| || |||||| |||||||||| || |||||||| |||| ||||||  ||||||||||||||||    
5346005 taactttcaattctgaaggttcttctgttacttttgaagttcctcaagtggaagggcgaatgttgaagacaataacgatatgtgttgtctattcttcaac 5346104  T
119 cccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagct 190  Q
      ||||||| ||| ||||||||||||| | |||||||||||| ||||||||||||||||| |||||||||||    
5346105 ttcggataatataacatctgatggcctgagaaacttgttggtgaaaaattacacaaaggctaccattcagct 5346176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 5126934 - 5126714
Alignment:
33 gaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatag 132  Q
    ||||||||||| ||||||||||| || |||||| || ||||||| |  |||||||   |||||||||||||||||||||||||||||  ||||||||||     
5126934 gaaggttcttcggtaacttttgaagtacctcaagtgaaagggcgtacgttgaagaaagtaatgatatgcattgtctattcttcaaccttggataacataa 5126835  T
133 catctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccata--agagatgcgttaatttcctttgaagacgaggaggg 230  Q
    |||| |||||||| |||| ||||||||| ||||||||||| |||||||||||||| ||| |||  ||||| ||   | | ||||||||||| ||||||||    
5126834 catcagatggccttacaagcttgttggtgaaaaattacacgaaggccaccattcaactctataagagagaggcagcagtctcctttgaagatgaggaggg 5126735  T
231 gcagagagtagtgtcaagtat 251  Q
    | |||||||||| ||||||||    
5126734 ggagagagtagtatcaagtat 5126714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 5177715 - 5177949
Alignment:
19 taactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaac 118  Q
    |||| |||||||| ||||||||||| ||||  ||||| ||||||||| |||||||| |||  || ||||| || ||||||||||||| ||||||||||||    
5177715 taaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggtgcactttaaagacaatgatgatatgcattgactattcttcaac 5177814  T
119 cccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccata--agagatgcgttaatttccttt 216  Q
    || |||||| ||| ||||  |||||||  ||||||||||||| || ||||||||||| ||||||||||||||  |||  ||||| || |||   ||||||    
5177815 cctggataatataacatcaaatggccttgcaaacttgttggttaagaattacacaaaagccaccattcagctttataagagagaggcattagcctccttt 5177914  T
217 gaagacgaggaggggcagagagtagtgtcaagtat 251  Q
    ||||| || ||||| ||||||||||| ||||||||    
5177915 gaagatgaagagggtcagagagtagtatcaagtat 5177949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 5689222 - 5688988
Alignment:
19 taactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaac 118  Q
    |||| |||||||| ||||||||||| ||||  ||||| ||||||||| ||||||||||||  || |||||  | ||||||||||| | ||||||| ||||    
5689222 taaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggcgcactttaaagacattgatgatatgcatcgactattctacaac 5689123  T
119 cccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttccttt 216  Q
    || |||||||||| ||||  |||||||  ||||||||||||| || ||||||||||| ||||||||||||||  ||||||  || || ||| | ||||||    
5689122 cctggataacataacatcaaatggccttgcaaacttgttggtgaagaattacacaaaagccaccattcagctttataagagcgaggcattagtctccttt 5689023  T
217 gaagacgaggaggggcagagagtagtgtcaagtat 251  Q
    ||||| || ||||| ||||||||||| ||||||||    
5689022 gaagatgaagagggacagagagtagtatcaagtat 5688988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 5242831 - 5242650
Alignment:
19 taactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaac 118  Q
    |||| ||| ||| ||||||||||||||| |||||||| ||||||||| |||||||||| || |||||||| |||| ||||||   |||||||||||||||    
5242831 taaccttcgattctgaaggttcttctgttacttttgaagtccctcaagtggaagggcgaatgttgaagacaataacgatatgtgctgtctattcttcaac 5242732  T
119 cccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga 200  Q
      ||||||  ||| |||||||||||||   ||||||||| || |||||||||||||||||||||||||||||| | ||||||    
5242731 ttcggatagtataacatctgatggccttggaaacttgttagtgaaaaattacacaaaggccaccattcagctctacaagaga 5242650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 5279540 - 5279774
Alignment:
19 taactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaac 118  Q
    |||| |||||||| ||||||||||| ||||  ||||| ||||||||| |||||||| |||  || |||||  | ||||||||||||| ||||||||||||    
5279540 taaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggtgcactttaaagacattgatgatatgcattgactattcttcaac 5279639  T
119 cccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccata--agagatgcgttaatttccttt 216  Q
    || |||||| ||| ||||  |||||||  ||||||||||||| || ||||||||||| ||||||||||||||  |||  ||||| || |||   ||||||    
5279640 cctggataatataacatcaaatggccttgcaaacttgttggtgaagaattacacaaaagccaccattcagctttataagagagaggcattagcctccttt 5279739  T
217 gaagacgaggaggggcagagagtagtgtcaagtat 251  Q
    ||||| || ||||| ||||||||||| ||||||||    
5279740 gaagatgaagagggtcagagagtagtatcaagtat 5279774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 5136221 - 5136066
Alignment:
33 gaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatag 132  Q
    |||||||||||||||||||| || ||||||||| |||||||||| |  ||||||||   |||||| |||||||||||| |||||||||| |||||||||     
5136221 gaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaagac---aatgatgtgcattgtctatacttcaaccccagataacataa 5136125  T
133 catctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctc 191  Q
    ||||   |||||| | |||  ||||||||||||||||||||||||||||||||||||||    
5136124 catcaagtggccttaaaaatgtgttggtaaaaaattacacaaaggccaccattcagctc 5136066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 5353166 - 5352948
Alignment:
32 tgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacata 131  Q
    |||||||||||||||||||||| |||||||||   |||||||||| |  ||||||||   |||||| |||||| ||||| | |||||||   ||||||||    
5353166 tgaaggttcttctgtaacttttcatgtccctctggtggaagggcgtaacttgaagac---aatgatgtgcattatctatacgtcaacccaaaataacata 5353070  T
132 gcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggagg 229  Q
     | ||  ||||||| | |||  ||||| ||||||||||||||||||| |||||||||||  ||||||||   || ||||||||||||||||| |||||||    
5353069 acttcatatggccttaaaaatgtgttgctaaaaaattacacaaaggctaccattcagctttataagagagaggcattaatttcctttgaagatgaggagg 5352970  T
230 ggcagagagtagtgtcaagtat 251  Q
    ||||||||||||| ||||||||    
5352969 ggcagagagtagtatcaagtat 5352948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 5101120 - 5100903
Alignment:
33 gaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatag 132  Q
    |||||||||||||||||||| || ||||||||| |||||||||| |  ||||||||   |||||| |||||||||||| |||||||||| |||||||||     
5101120 gaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaagac---aatgatgtgcattgtctatacttcaaccccagataacataa 5101024  T
133 catctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggg 230  Q
    ||||   |||||| | |||  |||| || |||||||||||||||||||||||||||||| ||||||  || || ||| | ||||||||||| |||||||     
5101023 catcaagtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggaggc 5100924  T
231 gcagagagtagtgtcaagtat 251  Q
     | ||| ||||| ||||||||    
5100923 tctgagggtagtatcaagtat 5100903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 5438998 - 5439167
Alignment:
27 aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata 126  Q
    |||| |||||||||||||||||||||| | ||||||||| |||||||||| |  |||| | |   | |||| |||||||||||||||||||| |||||||    
5438998 aattctgaaggttcttctgtaacttttcaagtccctcaagtggaagggcgtaatttgatgtc---attgatgtgcattgtctattcttcaactccggata 5439094  T
127 acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagag 199  Q
    ||||| |||| ||| |||| | |||  | ||||| | |||| ||||||||||||||||||||||| |||||||    
5439095 acataacatcagatagccttataaatgtattggtgataaatcacacaaaggccaccattcagctctataagag 5439167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 5448596 - 5448819
Alignment:
27 aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata 126  Q
    |||| |||||||||||||||||||||||| ||||||||| |||||| |||   ||||| | |   | |||| |||||||||||| |||||||||| ||||    
5448596 aattctgaaggttcttctgtaacttttgaagtccctcaagtggaagagcgtcaattgacgtc---attgatgtgcattgtctatacttcaaccccagata 5448692  T
127 acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacga 224  Q
    |  || |||||  |||||| | |||  ||||||| ||||||||||||||||| ||||||||  || ||||||  ||  | ||| |||||||||||||  |    
5448693 atgtaacatctagtggccttaaaaatgtgttggtgaaaaattacacaaaggctaccattcaaatctataagagtgagacattagtttcctttgaagataa 5448792  T
225 ggaggggcagagagtagtgtcaagtat 251  Q
    ||||||||||||  |||| ||||||||    
5448793 ggaggggcagaggttagtatcaagtat 5448819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 5398042 - 5398256
Alignment:
36 ggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatagcat 135  Q
    ||||||||| |||||||||| || |||||  |||||||||| |  ||||||||   |||||| |||||||| ||| ||||||| | ||||||  || |||    
5398042 ggttcttctttaacttttgaagttcctcatgtggaagggcgtaacttgaagac---aatgatgtgcattgtgtatacttcaactctggataatgtaacat 5398138  T
136 ctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggggca 233  Q
    ||  |||||| | |||| |||| || | |||||||||||||||||||||||||||| ||||||  || |||||| | ||||||||| | || ||||||||    
5398139 ctagtggccttaaaaacatgttagtgataaattacacaaaggccaccattcagctctataagagtgaggcgttattctcctttgaacatgaagaggggca 5398238  T
234 gagagtagtgtcaagtat 251  Q
     || ||||| ||||||||    
5398239 aagggtagtatcaagtat 5398256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 251
Target Start/End: Original strand, 5351393 - 5351610
Alignment:
33 gaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatag 132  Q
    |||| ||||||||| |  ||||| || |||||| ||||||||||    ||||||||   |||||| ||||| |||||| |||||||||| | |||| ||     
5351393 gaagtttcttctgtgaaatttgaagttcctcaagtggaagggcgtgacttgaagac---aatgatgtgcatagtctatacttcaacccctggtaacgtaa 5351489  T
133 catctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggg 230  Q
    ||||   |||||| | |||| |||| || ||||||||||||||||||||||||| |||| ||||||  || || ||| ||||||||||||| ||||||||    
5351490 catcaagtggccttaaaaacatgttagtgaaaaattacacaaaggccaccattcggctctataagagtgaggcattagtttcctttgaagatgaggaggg 5351589  T
231 gcagagagtagtgtcaagtat 251  Q
    ||||||  |||| ||||||||    
5351590 gcagaggttagtatcaagtat 5351610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 200
Target Start/End: Complemental strand, 5072966 - 5072820
Alignment:
51 tttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatagcatctgatggcctcacaa 150  Q
    ||||| ||||||||| ||||||||||||||||||||||   |||||||||| |||||||||||||| | ||  ||||  ||| ||| || ||||| | ||    
5072966 tttgaagtccctcaagtggaagggcgcatattgaagac---aatgatatgcgttgtctattcttcaccaccaaataatgtagtatcagacggccttaaaa 5072870  T
151 acttgttggtaaaaaattacacaaaggccaccattcagctccataagaga 200  Q
    ||||| |||| ||||||||||| || ||||||||||| ||  ||||||||    
5072869 acttgatggtgaaaaattacactaaagccaccattcaactatataagaga 5072820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 5156321 - 5156100
Alignment:
27 aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata 126  Q
    |||| ||||||||||||||| |  ||||| || |||||| |||||||||| |  ||||||||   |||||| |||||||||||| |||||||||| ||||    
5156321 aattctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagac---aatgatgtgcattgtctatacttcaaccccagata 5156225  T
127 acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacga 224  Q
    |  || ||| |  |||||| | |||| ||||  | |||||||||||||||||||||||||||||  ||||||  || || ||    ||||||||||| ||    
5156224 atgtaacatgtagtggccttaaaaacatgttattgaaaaattacacaaaggccaccattcagctttataagagtgaggcattggcctcctttgaagatga 5156125  T
225 ggaggggcagagagtagtgtcaagt 249  Q
     ||||||||||| ||||| ||||||    
5156124 agaggggcagagggtagtatcaagt 5156100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 249
Target Start/End: Original strand, 5372089 - 5372305
Alignment:
32 tgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacata 131  Q
    ||||||||||||||| |  ||||| || |||||| |||||||||| |  |||||||| || |||   |||| ||||| | ||||||| ||||||||  ||    
5372089 tgaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaattatg---tgcaatgtctgtacttcaactccggataatgta 5372185  T
132 gcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggagg 229  Q
     |||||  |||||| | |||| ||||  | |||||||||||||||||||||||||||||  ||||||  || || ||| | ||||||||||| || ||||    
5372186 acatctagtggccttaaaaacatgttattgaaaaattacacaaaggccaccattcagctttataagagtgaagcattagtctcctttgaagatgaagagg 5372285  T
230 ggcagagagtagtgtcaagt 249  Q
    ||||||| ||||| ||||||    
5372286 ggcagagggtagtatcaagt 5372305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 200
Target Start/End: Complemental strand, 23127613 - 23127448
Alignment:
32 tgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacata 131  Q
    ||||||||||||||||| |||||| |  |||||| |||||||||  |   ||||||| ||||||   ||  ||||| || |||||||||| ||||||||     
23127613 tgaaggttcttctgtaagttttgaagctcctcaagtggaagggcataacgtgaagacaataatg---tgtgttgtcaatacttcaaccccagataacatt 23127517  T
132 gcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga 200  Q
     | || |||||| | | |||| ||||||||||||||||||||||||  ||||||||| || ||||||||    
23127516 acctcggatggcgttaaaaacgtgttggtaaaaaattacacaaagggtaccattcagatctataagaga 23127448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 5283514 - 5283429
Alignment:
33 gaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaacccc 121  Q
    ||||||||||||||||||||||||||||||||| | |||||| | |  |||||| |   |||||| |||||||||||| ||||||||||    
5283514 gaaggttcttctgtaacttttgatgtccctcaagttgaagggtgtaacttgaagtc---aatgatgtgcattgtctatacttcaacccc 5283429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 5098203 - 5098367
Alignment:
32 tgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacata 131  Q
    |||||||||||| ||||||||| | || || ||| ||||||| || |  ||||| ||   |||||| |||||||||||| |||||||||| | ||||||     
5098203 tgaaggttcttcggtaacttttcaagttccccaagtggaaggccgtagcttgaaaac---aatgatgtgcattgtctatacttcaaccccagctaacatg 5098299  T
132 gcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagag 199  Q
      |||   |||||| | |||| |||| || |||||  ||||||||||||||||||||||| |||||||    
5098300 atatcaagtggccttaaaaacatgttagtgaaaaaccacacaaaggccaccattcagctctataagag 5098367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 248
Target Start/End: Complemental strand, 5180972 - 5180862
Alignment:
140 tggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggggcagaga 237  Q
    |||||| | |||| |||| || ||||||||||||||||| |||||||||||| ||||||  ||| ||||| | || |||||||| || ||||| |||||     
5180972 tggccttaaaaacatgttagttaaaaattacacaaaggctaccattcagctctataagagtgatacgttagtctcttttgaagatgaagagggtcagagg 5180873  T
238 gtagtgtcaag 248  Q
    ||||| |||||    
5180872 gtagtatcaag 5180862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 2938896 - 2939067
Alignment:
27 aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctatt--cttcaaccccgga 124  Q
    |||| |||| |||||||||| |  ||||| || |||||| |||||||||| |  ||||||||   |||||| ||||||||||||   ||| |||||| ||    
2938896 aattctgaatgttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagac---aatgatgtgcattgtctatatacttaaaccccaga 2938992  T
125 taacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagag 199  Q
    |||  || |||||  |||||| | |||| || |  | |||||||| | ||||||||||||||||||| |||||||    
2938993 taatgtaacatctagtggccttaaaaacatgatattgaaaaattatataaaggccaccattcagctctataagag 2939067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 22583601 - 22583437
Alignment:
24 ttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccgg 123  Q
    ||||||||  |||||||||||||||||||| | ||||||  | || ||||||| || |||||| | |||||||| |||||||||||||||||||||||||    
22583601 ttcaattgccaaggttcttctgtaacttttaaagtccctgtagtgaaagggcgtatgttgaagtcaataatgatctgcattgtctattcttcaaccccgg 22583502  T
124 ataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcag 188  Q
    ||||||||  ||| |||||||  |||  ||||||||| |||||| | ||||||||||||||||||    
22583501 ataacataagatccgatggccctacagccttgttggtgaaaaatcatacaaaggccaccattcag 22583437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 36213237 - 36213006
Alignment:
19 taactttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaac 118  Q
    |||| ||||||||  ||||||||||||||| |||||||||||||| | |||| || || |  || ||||| ||||||   || |||||||||||||||||    
36213237 taaccttcaattgcaaaggttcttctgtaatttttgatgtccctcgagtggatggacgtaacttaaagacaataatg---tgtattgtctattcttcaac 36213141  T
119 cccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttccttt 216  Q
     || || ||||||||||| ||||| || | |||| || ||||||||||| |||||||||| ||||||||| || ||||||||   || ||| | || |||    
36213140 tccagaaaacatagcatcagatggacttaaaaacgtgatggtaaaaaatcacacaaaggctaccattcagatctataagagagaggcattagtctcattt 36213041  T
217 gaagacgaggaggggcagagagtagtgtcaagtat 251  Q
    ||||| ||||||||||||||| |||| ||||||||    
36213040 gaagatgaggaggggcagagattagtatcaagtat 36213006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 47985701 - 47985478
Alignment:
27 aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata 126  Q
    |||| |||||||||||| ||||||||||| ||||||||| ||||| |||  |  || |||||   |||||| |||||||||||| |||||||| | |||     
47985701 aattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagac---aatgatgtgcattgtctatacttcaacctcagatg 47985605  T
127 acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacga 224  Q
    ||||| |||| |||||||| | |||| |||| || | |||| ||||||  |||| |||||| ||| ||||||  ||  | ||||| ||||||| ||| ||    
47985604 acataacatcagatggccttaaaaacgtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatga 47985505  T
225 ggaggggcagagagtagtgtcaagtat 251  Q
    ||||||| |||||||||| ||||||||    
47985504 ggagggggagagagtagtatcaagtat 47985478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 47994988 - 47994765
Alignment:
27 aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata 126  Q
    |||| |||||||||||| ||||||||||| ||||||||| ||||| |||  |  || |||||   |||||| |||||||||||| |||||||| | |||     
47994988 aattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagac---aatgatgtgcattgtctatacttcaacctcagatg 47994892  T
127 acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacga 224  Q
    ||||| |||| |||||||| | |||| |||| || | |||| ||||||  |||| |||||| ||| ||||||  ||  | ||||| ||||||| ||| ||    
47994891 acataacatcagatggccttaaaaacgtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatga 47994792  T
225 ggaggggcagagagtagtgtcaagtat 251  Q
    ||||||| |||||||||| ||||||||    
47994791 ggagggggagagagtagtatcaagtat 47994765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 48004275 - 48004052
Alignment:
27 aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata 126  Q
    |||| |||||||||||| ||||||||||| ||||||||| ||||| |||  |  || |||||   |||||| |||||||||||| |||||||| | |||     
48004275 aattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagac---aatgatgtgcattgtctatacttcaacctcagatg 48004179  T
127 acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacga 224  Q
    ||||| |||| |||||||| | |||| |||| || | |||| ||||||  |||| |||||| ||| ||||||  ||  | ||||| ||||||| ||| ||    
48004178 acataacatcagatggccttaaaaacgtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatga 48004079  T
225 ggaggggcagagagtagtgtcaagtat 251  Q
    ||||||| |||||||||| ||||||||    
48004078 ggagggggagagagtagtatcaagtat 48004052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 48013560 - 48013337
Alignment:
27 aattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggata 126  Q
    |||| |||||||||||| ||||||||||| ||||||||| ||||| |||  |  || |||||   |||||| |||||||||||| |||||||| | |||     
48013560 aattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagac---aatgatgtgcattgtctatacttcaacctcagatg 48013464  T
127 acatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacga 224  Q
    ||||| |||| |||||||| | |||| |||| || | |||| ||||||  |||| |||||| ||| ||||||  ||  | ||||| ||||||| ||| ||    
48013463 acataacatcagatggccttaaaaacgtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatga 48013364  T
225 ggaggggcagagagtagtgtcaagtat 251  Q
    ||||||| |||||||||| ||||||||    
48013363 ggagggggagagagtagtatcaagtat 48013337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 4319615 - 4319440
Alignment:
22 ctttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaacccc 121  Q
    |||||||||  |||||||||||||||| |||||| ||||||||| ||||||| || |  |||||||| ||||||   ||||||||||||||||||| |||    
4319615 ctttcaattcagaaggttcttctgtaatttttgaagtccctcaagtggaaggacgtagcttgaagacaataatg---tgcattgtctattcttcaagccc 4319519  T
122 ggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga 200  Q
      |  ||||| |||| ||||||||   |||  |||| || | |||| |||||||| |||||||||| ||| ||||||||    
4319518 atacgacataacatcagatggccttgaaaatgtgttagtgataaatcacacaaagaccaccattcaactctataagaga 4319440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 4362546 - 4362709
Alignment:
34 aaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatagc 133  Q
    |||||| |||||||| |||||| ||||||||| |||||||  | |  |||||||| ||||||   ||||||||||||||||||| |||  || ||||| |    
4362546 aaggttattctgtaatttttgaagtccctcaagtggaaggatgtagcttgaagacaataatg---tgcattgtctattcttcaagcccatatgacataac 4362642  T
134 atctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga 200  Q
    ||| |||||||| | |||  ||||||| | |||| |||||||| |||||||||| ||| ||||||||    
4362643 atcagatggccttagaaatgtgttggtgataaatcacacaaagaccaccattcaactctataagaga 4362709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 4336896 - 4337059
Alignment:
34 aaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatagc 133  Q
    |||||| |||||||| |||||| ||||||||  ||||||| || |  ||||||||   |||||| ||||||||||||||||||| |||  || ||||| |    
4336896 aaggttattctgtaaattttgaagtccctcatgtggaaggacgtagcttgaagac---aatgatgtgcattgtctattcttcaagcccaaatgacataac 4336992  T
134 atctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga 200  Q
    ||| ||||||||   |||  ||||||| | |||| |||||||| |||||||||| |||  |||||||    
4336993 atcagatggccttcaaaatgtgttggtgataaatcacacaaagaccaccattcaactctttaagaga 4337059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 25568954 - 25569050
Alignment:
157 tggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtat 251  Q
    |||| ||||||||||| ||| ||||||||||| || | ||||||   || ||| ||||||||||| ||||||||||||| | |||||| ||||||||    
25568954 tggtgaaaaattacaccaagtccaccattcaggtctacaagagagaggcattagtttcctttgaaaacgaggaggggcatatagtagtatcaagtat 25569050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 4122929 - 4122782
Alignment:
50 ttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacatagcatctgatggcctcaca 149  Q
    |||||| ||||||||| ||||||| || |  ||||||||   |||||| |||||||||||||| |||| |||  ||  ||||||||| | ||||||   |    
4122929 ttttgaagtccctcaagtggaaggacgtagcttgaagac---aatgatgtgcattgtctattcatcaagcccaaatggcatagcatcagttggccttcaa 4122833  T
150 aacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga 200  Q
    ||  ||||||| | |||| |||||||| |||||||||| ||| ||||||||    
4122832 aatgtgttggtgataaatcacacaaagaccaccattcaactctataagaga 4122782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 4346350 - 4346520
Alignment:
34 aaggttcttctgtaacttttgatgtccctcaaatggaagggcgcatattgaagacgataatgatatgcattgtctattcttcaaccccggataacata-- 131  Q
    |||||| ||||||||  ||||| ||||||||| ||||||| |  |  |||||||| ||||||   ||||||||||||||||||| ||| ||| |||||      
4346350 aaggttattctgtaatctttgaagtccctcaagtggaaggacatagcttgaagacaataatg---tgcattgtctattcttcaagcccagatgacataac 4346446  T
132 -----gcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagaga 200  Q
          |||| |||||||| | |||  ||||||| | |||| |||||||| |||||||||| ||| ||||||||    
4346447 atcagacatcagatggccttaaaaatgtgttggtgataaatcacacaaagaccaccattcaactctataagaga 4346520  T

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Target: scaffold0294 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 8104 - 8016
Alignment:
111 tcttcaaccccggataacatagcatctgatggcctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagag 199  Q
    ||||||||  ||||||||||| || | ||||| || | |||  |||| || ||||||||||||||||||||||||||| || |||||||    
8104 tcttcaactgcggataacataacaccagatggtcttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagatctataagag 8016  T

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Target: scaffold0294; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 8185 - 8137
Alignment:
24 ttcaattgtgaaggttcttctgtaacttttgatgtccctcaaatggaag 72  Q
    ||||||||||| ||||||||||||| |||| ||| ||||||| ||||||    
8185 ttcaattgtgatggttcttctgtaatttttaatgcccctcaagtggaag 8137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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