View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_high_95 (Length: 250)
Name: NF17166_high_95
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_high_95 |
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Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 39424921 - 39424832
Alignment:
| Q |
106 |
agacaaaatttgccaacacattctgtt----gtaaatgaattaacagtgttcatgtaattagcttcaaactcttgctaattcttgtaaat |
191 |
Q |
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| T |
39424921 |
agacaaaacttgccaacacattctgtttgttgtaaatgaattaacagtgttcatgtagttagcttcaaactcttgctaattcttgtaaat |
39424832 |
T |
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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 39424978 - 39424919
Alignment:
| Q |
9 |
agggatctacttaacaacattgatgatcgtataatcgagctgaagagacagaacggcaga |
68 |
Q |
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| T |
39424978 |
agggatctacttaacaacattgatgatcgtataatagagctgaagagacagaacggcaga |
39424919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 39424686 - 39424635
Alignment:
| Q |
188 |
aaatgtgagtctgagagttggtctgcatttt-agatgaaaatgcaatatctg |
238 |
Q |
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| T |
39424686 |
aaatgtgagtctgagagttggtctgcattttaagatgaaaatgcaatatctg |
39424635 |
T |
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