View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_high_96 (Length: 250)

Name: NF17166_high_96
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_high_96
NF17166_high_96
[»] chr3 (5 HSPs)
chr3 (75-250)||(45734039-45734214)
chr3 (89-250)||(45727569-45727719)
chr3 (13-60)||(45734005-45734052)
chr3 (32-60)||(45727462-45727490)
chr3 (75-103)||(45727477-45727505)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 45734039 - 45734214
Alignment:
Q  75 tcaaatgtgtatttatattacccacttatttaaccaacatatttcgtattaatcgcctaaagtagttcattagtcattaaagtgcaggtctccctcaaaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45734039 tcaaatgtgtatttatattacccacttatttaaccaacatatttcgtattaatcgcctaaagtagttcattagtcattaaagtgcaggtctccctcaaaa 45734138  T
Q  175 acagttcaataaattgaaagtgattaatcatttgttcaaatttattcaacatagttataaaatgacaaaagcatat 250  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45734139 acagttcaataaattgaaagtgatcaatcatttgttcgaatttattcaacatagttataaaatgacaaaagcatat 45734214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 250
Target Start/End: Original strand, 45727569 - 45727719
Alignment:
Q  89 atattacccacttatttaaccaacatatttcgtattaatcgcctaaagtagttcattagtcattaaagtgcaggtctccctcaaaaacagttcaataaat 188  Q
    |||||| ||||||||||||||||||||||||  || |||| |||||| || ||||||| ||||||||||||  ||||||| | |||| | |||||||||     
T  45727569 atattatccacttatttaaccaacatatttcacatgaatcacctaaactaattcattaatcattaaagtgcgagtctccccccaaaaaaattcaataaag 45727668  T
Q  189 tgaaagtgattaatcatttgttcaaatttattcaacatagttataaaatgacaaaagcatat 250  Q
    || ||||||||||||           ||||||||||||||||||||||||||| ||||||||    
T  45727669 tgtaagtgattaatc-----------tttattcaacatagttataaaatgacataagcatat 45727719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 45734005 - 45734052
Alignment:
Q  13 aatataattaaatttcccgtattttattaaccactcaaatgtgtattt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45734005 aatataattaaatttcccgtattttattaaccactcaaatgtgtattt 45734052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 45727462 - 45727490
Alignment:
Q  32 tattttattaaccactcaaatgtgtattt 60  Q
    |||||||||||||||||||||||||||||    
T  45727462 tattttattaaccactcaaatgtgtattt 45727490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 45727477 - 45727505
Alignment:
Q  75 tcaaatgtgtatttatattacccacttat 103  Q
    |||||||||||||||||||||||||||||    
T  45727477 tcaaatgtgtatttatattacccacttat 45727505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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