View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_low_1 (Length: 1054)

Name: NF17166_low_1
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_low_1
NF17166_low_1
[»] chr7 (9 HSPs)
chr7 (631-1039)||(48083505-48083913)
chr7 (15-297)||(48084279-48084561)
chr7 (294-567)||(48083977-48084253)
chr7 (355-437)||(48091797-48091879)
chr7 (396-472)||(48066494-48066570)
chr7 (759-833)||(48091513-48091587)
chr7 (356-427)||(1808047-1808118)
chr7 (856-915)||(48066151-48066212)
chr7 (355-437)||(48074707-48074789)
[»] chr1 (5 HSPs)
chr1 (62-204)||(35377077-35377219)
chr1 (37-206)||(35358405-35358574)
chr1 (65-171)||(35370606-35370712)
chr1 (356-420)||(35377880-35377944)
chr1 (356-441)||(35358962-35359047)
[»] chr4 (2 HSPs)
chr4 (59-138)||(6341675-6341754)
chr4 (356-421)||(6342778-6342843)
[»] chr6 (1 HSPs)
chr6 (78-160)||(7386882-7386964)


Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 631 - 1039
Target Start/End: Complemental strand, 48083913 - 48083505
Alignment:
Q  631 gagttttctagctaattctcttgtcactaaatttggtgactaatttagagaaatattttatgttttctctttccaaattttcctagtcgatacaagnnnn 730  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||        
T  48083913 gagttttctagctaattctcttgtcactaaatttggtgactaatttagagaaatattttatgttttctctttccaaatttccctagccgatacaagtttt 48083814  T
Q  731 nnnnagtagcaatggtaaactcgatcttactgattaggtcagggatattgtagccattagagaaacgtccggtaggcctgtgacttggataatcaatgcc 830  Q
        ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  48083813 ttttagtagcaatggtaaactcgatcttactaattaggtcagggatattgtagccattagagaaacgccctgtaggcctgtgacttggataatcaatgcc 48083714  T
Q  831 atatggataattgtcggctcgggccgtggtagcaagaaagtcattgttaccactgtccactagagaatctccaaaaacaaagaaagctcttggttgagca 930  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48083713 atatggataattgtcggctcgggccgtggtagcaagaaagtcattgttaccactgtccactagagaatctccaaaaacaaagaaagctcttggttgagca 48083614  T
Q  931 taagcacaaccaacaaagcttatcattacacaaaaagcaatcaccaaagaagtagccattgcaatgcaaaataattgagaggactgagaagtgttactaa 1030  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48083613 taagcacaaccaacaaagcttatcattacacaaaaagcaatcaccaaagaagtagccattgcaatgcaaaataattgagaggactgagaagtgttactaa 48083514  T
Q  1031 attgtatgt 1039  Q
    |||||||||    
T  48083513 attgtatgt 48083505  T

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Target: chr7; HSP #2
Raw Score: 279; E-Value: 1e-155
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 48084561 - 48084279
Alignment:
Q  15 ataataccctgagaactttacggtactcggaaatgagataacggacataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataata 114  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48084561 ataataccctgagaactttgcggtactcggaaatgagataacggacataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataata 48084462  T
Q  115 gttgttgacaaaatcattgccaccaagagtgatgagtacgagtgctctgttgactaggtttcttgctccttctgaaccaatgtgtgcacttactcttttc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48084461 gttgttgacaaaatcattgccaccaagagtgatgagtacgagtgctctgttgactaggtttcttgctccttctgaaccaatgtgtgcacttactcttttc 48084362  T
Q  215 tgatacaattcaaatagccttagctgcttgtagattcgaatgatatggatctgccaaaccaaccaatcatacatgtgttaatt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48084361 tgatacaattcaaatagccttagctgcttgtagattcgaatgatatggatctgccaaaccaaccaatcatacatgtgttaatt 48084279  T

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Target: chr7; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 294 - 567
Target Start/End: Complemental strand, 48084253 - 48083977
Alignment:
Q  294 aatttagtagcattatattaatgttttaacaatttgaatta---ctactaatagtttaatgttacacttacaaactggaatccggtatcattgagaattc 390  Q
    ||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48084253 aatttggtagcattatattaatgttttaacaatttgaattattactactaatagtttaatgttacacttacaaactggaatccggtatcattgagaattc 48084154  T
Q  391 caatcccagcggatgcaaagttggcaccaattagaagcttctctccaactagtagtgggctcaagtatggaagtgtaggctctaacccaagctccaaacc 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48084153 caatcccagcggatgcaaagttggcaccaattagaagcttctctccaactagtagtgggctcaagtatggaagtgtaggctctaacccaagctccaaacc 48084054  T
Q  491 tgcaattaacaatagagtagcacattaattatacaaatgttagaaacaagtatatgattagtcaaaattacatgttg 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48084053 tgcaattaacaatagagtagcacattaattatacaaatgttagaaacaagtatatgattagtcaaaattacatgttg 48083977  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 355 - 437
Target Start/End: Complemental strand, 48091879 - 48091797
Alignment:
Q  355 cacttacaaactggaatccggtatcattgagaattccaatcccagcggatgcaaagttggcaccaattagaagcttctctcca 437  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||| ||| |||  |||||||    
T  48091879 cacttacaaactggattccggtatcattgagaattccaatgccagcggaagcaaaattggcaccaactagtagcgcctctcca 48091797  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 396 - 472
Target Start/End: Complemental strand, 48066570 - 48066494
Alignment:
Q  396 ccagcggatgcaaagttggcaccaattagaagcttctctccaactagtagtgggctcaagtatggaagtgtaggctc 472  Q
    |||| ||||||||| ||||||||||||| |||||||||||  || || ||||||||||| |||||||||||| ||||    
T  48066570 ccagtggatgcaaaattggcaccaattacaagcttctctcggacaagcagtgggctcaaatatggaagtgtaagctc 48066494  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 759 - 833
Target Start/End: Complemental strand, 48091587 - 48091513
Alignment:
Q  759 actgattaggtcagggatattgtagccattagagaaacgtccggtaggcctgtgacttggataatcaatgccata 833  Q
    |||||| | |||||| || |||||||||||||||||||||||||| || ||  || |||||||||||||||||||    
T  48091587 actgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccata 48091513  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 1808118 - 1808047
Alignment:
Q  356 acttacaaactggaatccggtatcattgagaattccaatcccagcggatgcaaagttggcaccaattagaag 427  Q
    ||||||||| || | |||||||||||| || |||||||| ||||| ||  |||| |||||||||||||||||    
T  1808118 acttacaaattgaactccggtatcattaaggattccaattccagctgaaccaaaattggcaccaattagaag 1808047  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 856 - 915
Target Start/End: Complemental strand, 48066212 - 48066151
Alignment:
Q  856 gtggtagcaagaaagtcattgttaccactgtccac--tagagaatctccaaaaacaaagaaa 915  Q
    |||||||||| ||| ||||||||||||||||||||  || ||||||||| ||||| ||||||    
T  48066212 gtggtagcaacaaaatcattgttaccactgtccactataaagaatctcccaaaacgaagaaa 48066151  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 437
Target Start/End: Complemental strand, 48074789 - 48074707
Alignment:
Q  355 cacttacaaactggaatccggtatcattgagaattccaatcccagcggatgcaaagttggcaccaattagaagcttctctcca 437  Q
    |||||||||| || | ||| |||||||||||||||||||| ||||| || || || |||||||||| ||| |||  |||||||    
T  48074789 cacttacaaattgaattccagtatcattgagaattccaattccagcagaagcgaaattggcaccaactagtagcgcctctcca 48074707  T

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Target: chr1 (Bit Score: 60; Significance: 5e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 62 - 204
Target Start/End: Original strand, 35377077 - 35377219
Alignment:
Q  62 taatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccaccaagagtgatgagtacgagtgctc 161  Q
    |||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||| ||||| ||||||  ||||||||| | ||||     
T  35377077 taatctggaagagaaaattggcgagatcttgctgaaaatgggaccaaataataattgttgacaaaatcgttgcctccaagaacgatgagtacaattgctt 35377176  T
Q  162 tgttgactaggtttctt-gctccttctgaaccaatgtgtgcact 204  Q
    ||| ||||| ||||||| ||| | |||| |||||| ||||||||    
T  35377177 tgtggacta-gtttcttagcttcctctgcaccaatatgtgcact 35377219  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 37 - 206
Target Start/End: Original strand, 35358405 - 35358574
Alignment:
Q  37 gtactcggaaatgagataacggacataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgcca 136  Q
    |||||| || ||||||||   |||||| | ||| ||||||||||| |||||||| |||||||| || ||||||||||| || ||||||||||| |||||     
T  35358405 gtactcagatatgagataggtgacatagtttggaagagaaaattggcgagatctagctgaaaatgggaccaaataataattattgacaaaatcgttgcct 35358504  T
Q  137 ccaagagtgatgagtacgagtgctctgttgactaggtttcttgctccttctgaaccaatgtgtgcactta 206  Q
    |||||  |||||||||| | |||| |||||||||| | | | ||||| |||| |||||| ||||||||||    
T  35358505 ccaagcatgatgagtacaattgctttgttgactagttgtttagctccctctgcaccaatttgtgcactta 35358574  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 35370606 - 35370712
Alignment:
Q  65 tctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccaccaagagtgatgagtacgagtgctctgt 164  Q
    ||||| ||||||||||| ||||||||||||||||| ||  || ||||||| ||||| |||||||| ||||| |||| | |||||||||| |||||| |||    
T  35370606 tctggaagagaaaattggcgagatcttgctgaaaatggggcccaataataattgttaacaaaatcgttgcctccaataatgatgagtacaagtgctttgt 35370705  T
Q  165 tgactag 171  Q
    |||||||    
T  35370706 tgactag 35370712  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 35377880 - 35377944
Alignment:
Q  356 acttacaaactggaatccggtatcattgagaattccaatcccagcggatgcaaagttggcaccaa 420  Q
    ||||||||| || ||||| |||||||||||||||||||| || ||||||||||| ||||||||||    
T  35377880 acttacaaattgaaatccagtatcattgagaattccaatacccgcggatgcaaaattggcaccaa 35377944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 356 - 441
Target Start/End: Original strand, 35358962 - 35359047
Alignment:
Q  356 acttacaaactggaatccggtatcattgagaattccaatcccagcggatgcaaagttggcaccaattagaagcttctctccaacta 441  Q
    ||||||||| || |||||||||||||||||||||||||  || || |||||||| |||||||||| || ||| || || |||||||    
T  35358962 acttacaaattgaaatccggtatcattgagaattccaacacctgctgatgcaaaattggcaccaactaaaagtttttcaccaacta 35359047  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 6341675 - 6341754
Alignment:
Q  59 acataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccacc 138  Q
    |||||||| || |||| | ||| ||||||||| |||||  |||||||||||||||||||||| ||||||||||| |||||    
T  6341675 acataatcaggaagagcatattcacgagatctggctgagtaaggaaccaaataatagttgttcacaaaatcattcccacc 6341754  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 6342778 - 6342843
Alignment:
Q  356 acttacaaactggaatccggtatcattgagaattccaatcccagcggatgcaaagttggcaccaat 421  Q
    ||||||||| || | ||| || ||||||||||||||||||||||| || |||||||| ||||||||    
T  6342778 acttacaaattgaactccagtgtcattgagaattccaatcccagcagaagcaaagttagcaccaat 6342843  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 7386882 - 7386964
Alignment:
Q  78 attgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccaccaagagtgatgagtacgagtgct 160  Q
    |||||||||| ||||| ||| |||| ||||| || ||||| || ||||||||||||||||||| ||| ||||| || ||||||    
T  7386882 attgacgagaccttgcagaataaggcaccaagtagtagttattcacaaaatcattgccaccaacagttatgagaacaagtgct 7386964  T

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