View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_10 (Length: 630)
Name: NF17166_low_10
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 12 - 535
Target Start/End: Complemental strand, 40518508 - 40517983
Alignment:
| Q |
12 |
gaagcatggcctttgaagatgagatatgtccaccaaaccctccatacagagcatgtacacactttttacggaatacttcacatccttttcgactttccga |
111 |
Q |
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| T |
40518508 |
gaagcatggcctttgaagatgagatatgtccaccaaaccctccatacagagcatgtacacactttttacggaatacttcacatccttttcgactttccga |
40518409 |
T |
|
| Q |
112 |
atcagtttgtcatcaagtacctctgttcaaacagaggagtcgcataataatagaagcaatagctaggctgaaaatttgatgagccaaatcatgattccaa |
211 |
Q |
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| T |
40518408 |
atcagtttgtcatcaagtacctctgttcaaacagaggagtcgcataataatataagcaatagctaggctgaaaatttgatgagccaaatcatgattccaa |
40518309 |
T |
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| Q |
212 |
accttgcatgag--gacaccatcaaactagcaagggagaaattacggacatgggatgatcctggcatattatcatcaatatatatgcgcacgttagatta |
309 |
Q |
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|||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40518308 |
accttgcatgagaggacaccgtcaaactagcaagggaaaaattacggacatgggatgatcctggcatattatcatcaatatatatgcgcacattagatta |
40518209 |
T |
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| Q |
310 |
tttaattttcaattgtataagatagttcgggtctcatctattttaactagttatggaaccagatttaactactagtcgtgagaggaatttttcatggtat |
409 |
Q |
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| T |
40518208 |
tttaattttcaattgtataagatagttcgggtctcatctattttaactagttatggaaccagatttaactactagtcgtgagaggaatttttcatcgtat |
40518109 |
T |
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| Q |
410 |
attataactctatccaactcgagatattagtatttatagatgcaggagagcatatcctatttcgtaaattatagtattaaggaggaattaattcattggc |
509 |
Q |
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| T |
40518108 |
attataactctatccaactcgagatattagtatttatagatgcaagagagcatatcctatttcgtaaattatagtattaaggaggaattaattcattggc |
40518009 |
T |
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| Q |
510 |
tgcggatgataaaggcaaggcaatta |
535 |
Q |
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| T |
40518008 |
tgcggatgataaaggcaaggcaatta |
40517983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 526 - 613
Target Start/End: Complemental strand, 40517425 - 40517338
Alignment:
| Q |
526 |
aaggcaattatatatggtgtcaacgtttatgatatgctctcggaattaattacatatatgctctcgcaattacacccatgatggagtg |
613 |
Q |
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| T |
40517425 |
aaggcaattatatatggtgtcaacgtttatgatatgctctcggaattaattaaatatatgatctcgcaattacacccatgatggagtg |
40517338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 41837281 - 41837233
Alignment:
| Q |
20 |
gcctttgaagatgagatatgtccaccaaaccctccatacagagcatgta |
68 |
Q |
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| T |
41837281 |
gcctttgaagatgagaggtgtccgccaaaccctccatacaaagcatgta |
41837233 |
T |
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