View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_103 (Length: 243)
Name: NF17166_low_103
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_103 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 33556818 - 33556938
Alignment:
| Q |
121 |
taatttgtctttgtgttaatactctaatcaaagcataattacttatacttggaatattcatatttcataattgaaacccgaggcagtgtatttataattt |
220 |
Q |
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| T |
33556818 |
taatttgtctttatgttaatactctaatcaaagcataattacttatacgtggaatattcatatttcataattgaaacccgaggcaatgtatttataattt |
33556917 |
T |
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| Q |
221 |
atttatagcaatttaatctaa |
241 |
Q |
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| T |
33556918 |
atttatagcaatttaatctaa |
33556938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 33556749 - 33556794
Alignment:
| Q |
13 |
aaatattatacgtagcatgtttaatcaaattgatgcctctaaaatt |
58 |
Q |
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| T |
33556749 |
aaatcttatacgtagcatgtttaatcaaattgatgcctctaaaatt |
33556794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 33547048 - 33547100
Alignment:
| Q |
13 |
aaatattatacgtagcatgtttaatcaaattgatgcctctaaaatttaaactt |
65 |
Q |
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| T |
33547048 |
aaatcttatacctagcatgtttaaacaaatagatgcctctaaaatttaaactt |
33547100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 33547170 - 33547233
Alignment:
| Q |
175 |
tattcatatttcataattgaaacccgaggcagtgtatttataatttatttatagcaatttaatct |
239 |
Q |
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| T |
33547170 |
tattcatatttcataattgaaacccaaacaaatgtatttataa-ttatttatagcaatttaatct |
33547233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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