View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_105 (Length: 242)
Name: NF17166_low_105
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_105 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 37135013 - 37135241
Alignment:
| Q |
1 |
ctttctagcacaggtcatgaggatctcttatgaagtaacggatcacggatgacttgaggctcaaagtctggtttcacatacttagcaagtgtctccgcat |
100 |
Q |
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| T |
37135013 |
ctttctagcacaggtcatgaggatctcttatgaagtaacggatcacggatgacttgaggctcaaagtctggtttcacatacttagcaagtgtctccgcat |
37135112 |
T |
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| Q |
101 |
acaactcgtatcgtgcagtcattctgaaacaccacttgtctttaaactgcctacacaggttaagatccatgtctgttattaataaaccatcactgttacg |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135113 |
acaactcgtatcgcgcagtcattctgaaacaccacttgtctttaaactgcctacacaggttaagatccatgtctgttattaataaaccatcactgttacg |
37135212 |
T |
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| Q |
201 |
tgataaagacggcgtgcaggatgcatctg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
37135213 |
tgataaagacggcgtgcaggatgcatctg |
37135241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 37139035 - 37139263
Alignment:
| Q |
1 |
ctttctagcacaggtcatgaggatctcttatgaagtaacggatcacggatgacttgaggctcaaagtctggtttcacatacttagcaagtgtctccgcat |
100 |
Q |
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|||||||||||||||||| || |||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||| |
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| T |
37139035 |
ctttctagcacaggtcattagcatctcttatgaagtaaggggtcacggatgacttgaggctcaaattctggtttcacatattgagcaagtgtctccacat |
37139134 |
T |
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| Q |
101 |
acaactcgtatcgtgcagtcattctgaaacaccacttgtctttaaactgcctacacaggttaagatccatgtctgttattaataaaccatcactgttacg |
200 |
Q |
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|||||||||||||||||||||||| ||| | ||| ||||||||| | ||||| |||| |||||||||||||||||||| |||||| ||||| ||||| || |
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| T |
37139135 |
acaactcgtatcgtgcagtcattcggaagccccatttgtctttatattgcctgcacaagttaagatccatgtctgttactaataagccatccctgttgcg |
37139234 |
T |
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| Q |
201 |
tgataaagacggcgtgcaggatgcatctg |
229 |
Q |
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||||||||| || |||||||||||||||| |
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| T |
37139235 |
tgataaagatggtgtgcaggatgcatctg |
37139263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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