View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_107 (Length: 240)
Name: NF17166_low_107
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_107 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 37598521 - 37598315
Alignment:
| Q |
16 |
aatatatatgattctaattcattcttgtagatatgtctaacatatataccccgagcaactcgtccttatcaatttgttaggaaaattgtcgaacccataa |
115 |
Q |
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| T |
37598521 |
aatatatatgattctaattcattcttgtagatatgtctaacatatataccccaagcaactcgtccttatcaatttgttaggaaaattgtcgaacccataa |
37598422 |
T |
|
| Q |
116 |
taagttcttaaaggttgcattattgaagccataaacgaaagattgcttcaaagtgatgtggcactatagagtccacttaagtcattcataataaattgta |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37598421 |
taagttcttaaaggttgcaatattgaagccataaacgaaagattgcttcaaaatgatgtggcactatagagtccacttaagtcattcataataaattgta |
37598322 |
T |
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| Q |
216 |
tcattgg |
222 |
Q |
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||||||| |
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| T |
37598321 |
tcattgg |
37598315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 37603041 - 37602836
Alignment:
| Q |
22 |
tatgattctaattcattcttgtagatatgtctaacatatataccccgagcaactcgtccttatcaatttgttaggaaaattgtcgaacccataataagtt |
121 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37603041 |
tatgattctaattcattcttgtagatgtgtctaacatataaacatcgagcaactcgtccttatcaatttgttaggcaaattgtcgaacccataataagtt |
37602942 |
T |
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| Q |
122 |
cttaaaggttgcattattgaagccataaacgaaagattgcttcaaagtgatgtggcactatagagtccacttaagtcattcataataaattgtatcattg |
221 |
Q |
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||||| ||||||| |||||||| | |||||||||||||||||||||||| || ||| | |||||||||||||||||| ||||||||||||||||||||| |
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| T |
37602941 |
cttaagggttgcactattgaagttaaaaacgaaagattgcttcaaagtgacgtagcattgtagagtccacttaagtcactcataataaattgtatcattg |
37602842 |
T |
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| Q |
222 |
gtgatg |
227 |
Q |
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| |||| |
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| T |
37602841 |
gagatg |
37602836 |
T |
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