View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17166_low_114 (Length: 232)
Name: NF17166_low_114
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_114 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 18418152 - 18418371
Alignment:
| Q |
1 |
ttagctttggagaaagtggtggtgttgatgaagttttggttggaagtggtggtgatgatggtagagaaagtgattttggtggcaatttcttgattgaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18418152 |
ttagctttggagaaagtggtggtgttgatgaagttttggttggaagtggtggtgatgatggtagtgaaagtgattttggtggtaatttcttgattgaatt |
18418251 |
T |
|
| Q |
101 |
tcttctttcaagatttggaactctgttacaagttggttgaagaacaggtcttccattgattttggcaacaggtgatgtagctgtggctgtggttgtgctt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18418252 |
tcttctttcaagatttggcactctgttacaagttggttgaagaacaggtcttccattgattttggcaacaggtgatgtagctgtggctgtggttttgctt |
18418351 |
T |
|
| Q |
201 |
tctatgcctactttggcctt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18418352 |
tctatgcctactttggcctt |
18418371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 26804663 - 26804769
Alignment:
| Q |
64 |
gagaaagtgattttggtggcaatttcttgattgaatttcttctttcaagatttggaactctgttacaagttggttgaagaacaggtcttccattgatttt |
163 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||| || ||||||||||| || || |||||||||||| | |
|
|
| T |
26804663 |
gagaaagtgattttggtgttgatttcttaattgagtttcttctttcaagatttggaacatggttgcatgttggttgaagtactggccttccattgattct |
26804762 |
T |
|
| Q |
164 |
ggcaaca |
170 |
Q |
| |
|
|||||| |
|
|
| T |
26804763 |
agcaaca |
26804769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 32591176 - 32591282
Alignment:
| Q |
64 |
gagaaagtgattttggtggcaatttcttgattgaatttcttctttcaagatttggaactctgttacaagttggttgaagaacaggtcttccattgatttt |
163 |
Q |
| |
|
||||||||||||| |||| ||||||| ||||| ||||||||||||||||||| ||| ||| || ||||||||||| || || |||||||||||| | |
|
|
| T |
32591176 |
gagaaagtgatttcggtgttgatttcttaattgagtttcttctttcaagatttgaaacatggttgcatgttggttgaagtactggccttccattgattct |
32591275 |
T |
|
| Q |
164 |
ggcaaca |
170 |
Q |
| |
|
|||||| |
|
|
| T |
32591276 |
agcaaca |
32591282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University