View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_115 (Length: 231)
Name: NF17166_low_115
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_115 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 33866906 - 33866684
Alignment:
| Q |
9 |
acatcatcacaaaagaacaatattcctcacaaaatctaaagcaatgaaataaattaacaaaatcatacctttaacttcttcatcccaacaaaaccttttg |
108 |
Q |
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| T |
33866906 |
acatcatcacaaaagaacaatattcctcacaaaatctaaagcaatgaaagaaattaacaaaatcatacctttaacttcttcatcccaacaaaaccttttg |
33866807 |
T |
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| Q |
109 |
gccaacgtagatttccccgaaccaccagaaccagtaacagtaacaacagaaacactaacctcatccttcaacaatttcatcttcaactcattcaaaggac |
208 |
Q |
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| T |
33866806 |
gccaacgtagatttccccgaaccaccagaaccagtaacagtaacaacagaaacactaacctcatccttcaacaatctcatcttcaactcattcaaaggac |
33866707 |
T |
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| Q |
209 |
catccaacccaacaataaaacca |
231 |
Q |
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| T |
33866706 |
catccaacccaacaataaaacca |
33866684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 33882701 - 33882527
Alignment:
| Q |
63 |
taacaaaatcatacctttaacttcttcatcccaacaaaaccttttggccaacgtagatttccccgaaccaccagaaccagtaacagtaacaacagaaaca |
162 |
Q |
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||||| |||||||||||| |||| ||||||||| |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |
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| T |
33882701 |
taacagaatcataccttttacttgttcatcccagcaaaactttttggccaacgtagacttacccgaaccaccagaaccagtaacagtaacaacagagaca |
33882602 |
T |
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| Q |
163 |
ctaacctcatcct------tcaacaatttcatcttcaactcattcaaaggaccatccaacccaacaataaaacca |
231 |
Q |
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| T |
33882601 |
ctaagctcattcttcttactcaacaatatctccttcaacttattgaaagtctcatccgacccaacaataaaacca |
33882527 |
T |
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