View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_low_118 (Length: 228)

Name: NF17166_low_118
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_low_118
NF17166_low_118
[»] chr4 (13 HSPs)
chr4 (19-107)||(41842792-41842880)
chr4 (19-94)||(12701042-12701118)
chr4 (19-94)||(56100147-56100223)
chr4 (13-94)||(35929705-35929787)
chr4 (19-94)||(21555384-21555460)
chr4 (26-107)||(827840-827920)
chr4 (13-94)||(36609422-36609505)
chr4 (13-94)||(23249468-23249550)
chr4 (13-93)||(44243706-44243787)
chr4 (19-66)||(53584604-53584651)
chr4 (19-94)||(19598371-19598447)
chr4 (40-94)||(27733401-27733456)
chr4 (19-83)||(35749389-35749453)
[»] scaffold0306 (1 HSPs)
scaffold0306 (12-94)||(13065-13148)
[»] scaffold0152 (1 HSPs)
scaffold0152 (12-94)||(22179-22262)
[»] chr8 (18 HSPs)
chr8 (19-104)||(3001376-3001462)
chr8 (19-94)||(23403602-23403678)
chr8 (19-107)||(30204646-30204733)
chr8 (19-94)||(21567711-21567787)
chr8 (13-79)||(22798539-22798605)
chr8 (19-94)||(4623859-4623935)
chr8 (19-94)||(23275536-23275612)
chr8 (13-94)||(16655976-16656058)
chr8 (22-94)||(29958523-29958596)
chr8 (19-94)||(14842312-14842388)
chr8 (19-106)||(45310013-45310100)
chr8 (13-94)||(4234176-4234258)
chr8 (19-94)||(36470144-36470221)
chr8 (22-94)||(41787503-41787576)
chr8 (19-83)||(39436845-39436909)
chr8 (13-94)||(37630000-37630082)
chr8 (19-56)||(4414230-4414267)
chr8 (19-94)||(36046538-36046613)
[»] chr2 (22 HSPs)
chr2 (13-94)||(13274199-13274280)
chr2 (19-104)||(30393591-30393677)
chr2 (13-94)||(37060088-37060170)
chr2 (12-94)||(5958963-5959046)
chr2 (21-94)||(4382213-4382287)
chr2 (14-94)||(6974526-6974607)
chr2 (12-94)||(21423362-21423445)
chr2 (8-94)||(28107497-28107584)
chr2 (19-92)||(15070401-15070475)
chr2 (13-94)||(24475941-24476023)
chr2 (13-79)||(37140159-37140225)
chr2 (19-94)||(27004453-27004529)
chr2 (19-94)||(30609695-30609771)
chr2 (19-94)||(10217364-10217440)
chr2 (19-94)||(22194292-22194368)
chr2 (24-73)||(27404646-27404695)
chr2 (19-94)||(37802845-37802921)
chr2 (43-94)||(7747954-7748006)
chr2 (12-94)||(14786237-14786314)
chr2 (19-107)||(5807318-5807404)
chr2 (21-66)||(43022919-43022964)
chr2 (49-94)||(30757193-30757239)
[»] chr6 (10 HSPs)
chr6 (19-94)||(2814899-2814975)
chr6 (22-94)||(444528-444601)
chr6 (13-107)||(6200160-6200253)
chr6 (19-77)||(1067804-1067862)
chr6 (19-79)||(24640377-24640437)
chr6 (19-94)||(26393998-26394074)
chr6 (8-94)||(23774062-23774149)
chr6 (13-57)||(12324170-12324214)
chr6 (39-107)||(34710135-34710202)
chr6 (34-79)||(2993609-2993654)
[»] chr5 (17 HSPs)
chr5 (13-107)||(34766882-34766975)
chr5 (13-94)||(3729342-3729424)
chr5 (19-94)||(8159079-8159155)
chr5 (19-94)||(9793644-9793720)
chr5 (19-94)||(21583853-21583929)
chr5 (19-94)||(39508325-39508401)
chr5 (13-94)||(9793741-9793823)
chr5 (13-94)||(41929339-41929421)
chr5 (19-94)||(9913806-9913882)
chr5 (13-92)||(25081765-25081845)
chr5 (13-92)||(25139734-25139814)
chr5 (22-92)||(20815677-20815748)
chr5 (19-94)||(20736167-20736243)
chr5 (19-79)||(21020687-21020747)
chr5 (19-83)||(2068967-2069029)
chr5 (19-94)||(3711186-3711266)
chr5 (41-107)||(41910216-41910281)
[»] chr3 (15 HSPs)
chr3 (19-94)||(36404231-36404307)
chr3 (27-104)||(16353488-16353566)
chr3 (19-94)||(45602988-45603064)
chr3 (19-92)||(48944116-48944190)
chr3 (22-94)||(35534489-35534562)
chr3 (19-94)||(39391961-39392037)
chr3 (13-94)||(14201715-14201795)
chr3 (13-94)||(29360480-29360562)
chr3 (13-94)||(37115896-37115978)
chr3 (13-94)||(46487268-46487349)
chr3 (13-94)||(52742350-52742432)
chr3 (29-94)||(3618349-3618415)
chr3 (31-94)||(54883001-54883065)
chr3 (40-94)||(47599389-47599444)
chr3 (32-94)||(48644538-48644601)
[»] chr1 (15 HSPs)
chr1 (13-94)||(39001945-39002027)
chr1 (19-106)||(794917-795005)
chr1 (12-103)||(26653940-26654032)
chr1 (19-104)||(571651-571737)
chr1 (13-92)||(1585858-1585938)
chr1 (23-94)||(11121865-11121937)
chr1 (13-94)||(6750319-6750401)
chr1 (13-83)||(41998900-41998970)
chr1 (14-94)||(3695405-3695486)
chr1 (19-94)||(18808782-18808858)
chr1 (36-94)||(36290612-36290671)
chr1 (19-104)||(44272356-44272443)
chr1 (13-79)||(4792593-4792659)
chr1 (13-92)||(24909519-24909599)
chr1 (19-56)||(9224872-9224909)
[»] scaffold0025 (1 HSPs)
scaffold0025 (13-94)||(67870-67952)
[»] chr7 (6 HSPs)
chr7 (19-107)||(8163641-8163728)
chr7 (19-94)||(40337075-40337151)
chr7 (19-107)||(35589403-35589492)
chr7 (19-94)||(41326045-41326121)
chr7 (34-94)||(28089153-28089214)
chr7 (19-106)||(2362381-2362467)
[»] scaffold0302 (1 HSPs)
scaffold0302 (13-94)||(18512-18594)
[»] scaffold0532 (1 HSPs)
scaffold0532 (19-66)||(11323-11370)
[»] scaffold0121 (1 HSPs)
scaffold0121 (19-94)||(37412-37488)
[»] scaffold0140 (1 HSPs)
scaffold0140 (13-94)||(21474-21556)
[»] scaffold1248 (1 HSPs)
scaffold1248 (19-59)||(972-1012)
[»] scaffold0952 (1 HSPs)
scaffold0952 (19-59)||(1301-1341)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 41842792 - 41842880
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatcttttacatgttttaggtttttagtctcc 107  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||||    
T  41842792 ttgaaatagtttttgttttcggtttttgaaatatacaaatccttttctcacaattgttatcttttacatgttttagttttttagtctcc 41842880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 12701042 - 12701118
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgtta-tcttttacatgttttag 94  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||    
T  12701042 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttcttacaatagttattcttttacatgttttag 12701118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 56100223 - 56100147
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||| ||||||||||||||||    
T  56100223 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgcaatagttatccttttacatgttttag 56100147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 35929705 - 35929787
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||| |||||||||    
T  35929705 gcctgtttgaaatagtttttgttttcagtttttgaaatatataagtcctcttctcacaatagttatcattttatatgttttag 35929787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 21555384 - 21555460
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||| ||||||||||||||||    
T  21555384 ttgaaatagtttttgttttcagtttttgaaatatataagtcttcttctcacaatagttatccttttacatgttttag 21555460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 827840 - 827920
Alignment:
Q  26 agtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttaggtttttagtctcc 107  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||  |||||||||||    
T  827840 agtttttgttttcggtttttgaaatatacaagtcctcttctcacaatagttatctttttacatgttttag--ttttagtctcc 827920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 36609505 - 36609422
Alignment:
Q  13 gcctggttgaaatagtttttgtttt-cagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||    
T  36609505 gcctgtttgaaatagtttttgtttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttag 36609422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 23249468 - 23249550
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||| |||||| | ||||||||||| |||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||    
T  23249468 gcctgtttgaaacaatttttgttttcggtttttgaaatatacaagccctcttctcacaatagttatccttttacatgttttag 23249550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 44243787 - 44243706
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgtttta 93  Q
    ||||| ||||||||  ||||||||| ||||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||    
T  44243787 gcctgtttgaaataaattttgtttttagtttttgaaatatacaagtcatcttcttacaatagttatccttttatatgtttta 44243706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 53584651 - 53584604
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttct 66  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53584651 ttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttct 53584604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 19598371 - 19598447
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||||||||||||||||||||||||| |||||||||||||| | |||| | ||| ||| || |||||||||||||||    
T  19598371 ttgaaatagtttttgttttcagttttcgaaatatacaagtcattttctcaaaatagttttctttttacatgttttag 19598447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 27733401 - 27733456
Alignment:
Q  40 gtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||    
T  27733401 gtttttgaaatatacaagacctcttctcacaatagttatccttttacatgttttag 27733456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 35749389 - 35749453
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatctttt 83  Q
    |||||||| ||||| |||||| ||||||||||||||||||| |||||| | |||  |||||||||    
T  35749389 ttgaaataatttttattttcaatttttgaaatatacaagtcatcttctcataataattatctttt 35749453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 13148 - 13065
Alignment:
Q  12 ggcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  13148 ggcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttag 13065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 22179 - 22262
Alignment:
Q  12 ggcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  22179 ggcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttag 22262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 3001462 - 3001376
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttaggtttttagtc 104  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||    
T  3001462 ttgaaatagtttttattttcagtttttgaaatatacaagtcctcttctcacaatggttatctttttacatgttttagttttttagtc 3001376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 23403602 - 23403678
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  23403602 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttag 23403678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 30204733 - 30204646
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttaggtttttagtctcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||  |||||||||||    
T  30204733 ttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttag--ttttagtctcc 30204646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 21567711 - 21567787
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||| |||||||||||||||    
T  21567711 ttgaaatagtttttgttttcagttttagaaatatacaaatcctcttcttacaatagttatctttttacatgttttag 21567787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 22798539 - 22798605
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc 79  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  22798539 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatc 22798605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 4623935 - 4623859
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||| ||||||||||||||||    
T  4623935 ttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctcacaatagttatccttttacatgttttag 4623859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 23275612 - 23275536
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgtta-tcttttacatgttttag 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  | |||| |||||||||||||||||    
T  23275612 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctctttttacggtagttattcttttacatgttttag 23275536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 16655976 - 16656058
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| | |||||| ||||| |||||| |||||||||||||||    
T  16655976 gcctgtttgaaatagtttttgttttcagtttttaaaatatacaagccttcttctcacaatagttatcattttacatgttttag 16656058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 29958596 - 29958523
Alignment:
Q  22 aaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||| |||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||    
T  29958596 aaataatttttgttttcagtttttgaaatatacaagtcatcttattacaatagttatccttttacatgttttag 29958523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 14842312 - 14842388
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| | ||||| |||||| |||||||| ||||||    
T  14842312 ttgaaataatttttgttttcagtttttgaaatatacaagtcctcttttcacaatagttatcattttacatattttag 14842388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 45310100 - 45310013
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatcttttacatgttttaggtttttagtctc 106  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| | | ||| |||||  |||||||||||||  |||||||||||    
T  45310100 ttgaaatagtttttgttttcaatttttgaaatatacaagttctcttttcataatggttattctttacatgttttatttttttagtctc 45310013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 4234176 - 4234258
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgtta-tcttttacatgttttag 94  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| ||||||  |||| ||||  ||||||||||||||||    
T  4234176 gcctgtttaaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcgcaatagttagccttttacatgttttag 4234258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 36470221 - 36470144
Alignment:
Q  19 ttgaaatagtttttgtttt-cagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||||| |||||||||| |||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  36470221 ttgaaataatttttgtttttcagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttag 36470144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 41787503 - 41787576
Alignment:
Q  22 aaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||||||||||||||||||||||| ||||||| || | ||||||||||||| |||||| |||||||||||||||    
T  41787503 aaatagtttttgttttcagtttttaaaatatataaattctcttcttacaatagttatctttttacatgttttag 41787576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 39436845 - 39436909
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatctttt 83  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||    
T  39436845 ttgaaataatttttgttttcaatttttgaaatatacaagtcctcttctcacaatagttatttttt 39436909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 37630000 - 37630082
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgtta-tcttttacatgttttag 94  Q
    ||||| ||||||||||||||||||||||||||| ||||||| ||| ||||||||  |||| ||||  ||||||||||||||||    
T  37630000 gcctgtttgaaatagtttttgttttcagttttttaaatatataagccctcttctcgcaatagttagccttttacatgttttag 37630082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 4414230 - 4414267
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaa 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4414230 ttgaaatagtttttgttttcagtttttgaaatatacaa 4414267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 36046613 - 36046538
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||||||||||||||| ||||||||||||||||||| ||  ||| | ||||| ||||| ||||||||||||||||    
T  36046613 ttgaaatagtttttgttt-cagtttttgaaatatacaaatctccttttcacaatagttatccttttacatgttttag 36046538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 13274199 - 13274280
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatcttttacatgttttag 94  Q
    ||||| ||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  13274199 gcctgtttgaaatagtttttgtttttaatttttgaaatatacaagtcctcttctcacaatagttatcttttacatgttttag 13274280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 30393677 - 30393591
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttaggtttttagtc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||| |||||||||||||||| |||||||||    
T  30393677 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttttgataatggttatccttttacatgttttagttttttagtc 30393591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 37060170 - 37060088
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||    
T  37060170 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttag 37060088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 5958963 - 5959046
Alignment:
Q  12 ggcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||| ||||||||||||||||    
T  5958963 ggcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgtaatagttatccttttacatgttttag 5959046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 4382213 - 4382287
Alignment:
Q  21 gaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||    
T  4382213 gaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcattttacatgttttag 4382287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 6974607 - 6974526
Alignment:
Q  14 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||| ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| |||||| |||||||||||||||    
T  6974607 cctgtttgaaatagtttttgttttcagtttttgaaatatataagtgctcttctcacaatagttatcattttacatgttttag 6974526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 21423362 - 21423445
Alignment:
Q  12 ggcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||||| || |||||||||||||    
T  21423362 ggcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcatctcacaatagttatcctattacatgttttag 21423445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 28107584 - 28107497
Alignment:
Q  8 ttaaggcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||| ||||| |||||| | ||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||    
T  28107584 ttaaagcctgtttgaaacaatttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttag 28107497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 15070475 - 15070401
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgtttt 92  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||| |||||||    
T  15070475 ttgaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttatatgtttt 15070401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 24476023 - 24475941
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||| |||||||||||||||||||||||||||||||||||||| || |||| | ||||| |||||| |||||||||||||||    
T  24476023 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcttcttatcacaatagttatctttttacatgttttag 24475941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 37140225 - 37140159
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc 79  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  37140225 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgcaatagttatc 37140159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 27004453 - 27004529
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||||| |||||| |||||||||    
T  27004453 ttgaaatagtttttgttttcaatttttgaaatatataagtcctcttctcacaatagttatccttttatatgttttag 27004529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 30609771 - 30609695
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||||| |||||||||||||||| |||||||||||||||| |||||| ||||| |||||| |||||||||||||||    
T  30609771 ttgaaatcgtttttgttttcagttattgaaatatacaagtcttcttctcacaatagttatcattttacatgttttag 30609695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 10217440 - 10217364
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgtta-tcttttacatgttttag 94  Q
    |||||||||||||| ||||||||||||||||||||||||| | ||| ||| ||| |||| |||||||||||||||||    
T  10217440 ttgaaatagtttttattttcagtttttgaaatatacaagttccctttttagaatagttattcttttacatgttttag 10217364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 22194368 - 22194292
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||||||||||||||||||  |||||||||||||||||||||| || ||| ||| |||||| |||||||||||||||    
T  22194368 ttgaaatagtttttgtttttggtttttgaaatatacaagtcctttttttataatagttatcattttacatgttttag 22194292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 27404695 - 27404646
Alignment:
Q  24 atagtttttgttttcagtttttgaaatatacaagtcctcttcttacaatt 73  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  27404695 atagtttttgtttttagtttttgaaatatacaagtcctcttctcacaatt 27404646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 37802921 - 37802845
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||||||||||||||||| | ||||||||||||||||||| |||||| | |||  ||||| |||||||||||||||    
T  37802921 ttgaaatagtttttgttttaaatttttgaaatatacaagtcttcttctcataatatttatctttttacatgttttag 37802845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 7748006 - 7747954
Alignment:
Q  43 tttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||||||||||||||||||||||||||||  |||||| |||||||||||||||    
T  7748006 tttgaaatatacaagtcctcttcttacaagagttatcattttacatgttttag 7747954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 14786237 - 14786314
Alignment:
Q  12 ggcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||| ||||||||||||||||||||      |||||||||||||||||||||| ||||| ||||| || |||||||||||||    
T  14786237 ggcctgtttgaaatagtttttgttttc------tgaaatatacaagtcctcttctcacaatagttatcctattacatgttttag 14786314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 5807404 - 5807318
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttaggtttttagtctcc 107  Q
    |||||||||||||||||| ||||||||||||||||||| | | ||| | ||||| ||||| |||||| |||||||||  |||||||||||    
T  5807404 ttgaaatagtttttgttt-cagtttttgaaatatacaaattcccttttcacaatagttatccttttatatgttttag--ttttagtctcc 5807318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 43022964 - 43022919
Alignment:
Q  21 gaaatagtttttgttttcagtttttgaaatatacaagtcctcttct 66  Q
    |||||| |||||||||| ||||||| ||||||||||||||||||||    
T  43022964 gaaataatttttgtttttagtttttaaaatatacaagtcctcttct 43022919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 30757239 - 30757193
Alignment:
Q  49 atatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  30757239 atatacaagtcctcttctcacaatagttatccttttacatgttttag 30757193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 2814975 - 2814899
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  2814975 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatcattttacatgttttag 2814899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 444528 - 444601
Alignment:
Q  22 aaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||    
T  444528 aaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatcctattacatgttttag 444601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 6200253 - 6200160
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttaggtttttagtctcc 107  Q
    ||||| |||||||| ||||||||||||||||||||||||||||| | ||||||| ||||| ||||| ||||||||| ||||||  |||||||||||    
T  6200253 gcctgtttgaaatattttttgttttcagtttttgaaatatacaaattctcttctcacaatagttatccttttacatattttag--ttttagtctcc 6200160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 1067804 - 1067862
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgtta 77  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  1067804 ttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagtta 1067862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 24640437 - 24640377
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc 79  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||    
T  24640437 ttgaaatagtttttgttttcagtttttgaaatatgcaagtcctcttctcataatagttatc 24640377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 26394074 - 26393998
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||||||||||||||||||||||||||||||||| || || ||||||  ||||  ||||| |||||||||||||||    
T  26394074 ttgaaatagtttttgttttcagtttttgaaatataaaaatcttcttctcgcaatatttatcattttacatgttttag 26393998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 23774062 - 23774149
Alignment:
Q  8 ttaaggcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||| ||| |||||||||||||| |||| | |||||||||||||||||| ||||||| | ||| ||||| |||||| |||||||||    
T  23774062 ttaaggtctgtttgaaatagtttttatttttaatttttgaaatatacaagttctcttctcataatagttatccttttatatgttttag 23774149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 12324170 - 12324214
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaag 57  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||    
T  12324170 gcctgtttgaagtagtttttgttttcagtttttgaaatatacaag 12324214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 34710135 - 34710202
Alignment:
Q  39 agtttttgaaatatacaagtcctcttcttacaattgtta-tcttttacatgttttaggtttttagtctcc 107  Q
    |||||||||||||||||||| ||||||| ||| | |||| ||||||| |||||||||  |||||||||||    
T  34710135 agtttttgaaatatacaagttctcttctcacagtagttattcttttatatgttttag--ttttagtctcc 34710202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 2993654 - 2993609
Alignment:
Q  34 ttttcagtttttgaaatatacaagtcctcttcttacaattgttatc 79  Q
    |||| |||||||||||||||||||| ||||||| ||||| ||||||    
T  2993654 tttttagtttttgaaatatacaagttctcttctcacaatagttatc 2993609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 34766975 - 34766882
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgtta-tcttttacatgttttaggtttttagtctcc 107  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||  |||||||||||    
T  34766975 gcctgtttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcacaatagttattcttttacatgttttag--ttttagtctcc 34766882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 3729424 - 3729342
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||| ||||||||||||||||    
T  3729424 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaataattatccttttacatgttttag 3729342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 8159155 - 8159079
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||  |||| ||||||||||||||||    
T  8159155 ttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcacaataattatccttttacatgttttag 8159079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 9793720 - 9793644
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||| ||||||||||||||||    
T  9793720 ttgaaatagtttttgttttcagtttttgaaatatacaaatcccctttttacaatagttatccttttacatgttttag 9793644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 21583853 - 21583929
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| | ||| |||||| |||||||||||||||    
T  21583853 ttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcataatagttatctttttacatgttttag 21583929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 39508401 - 39508325
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgtta-tcttttacatgttttag 94  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||| |||||||||||||||||    
T  39508401 ttgaaatagtttttgttttcagtttttgaaatatacaagtctttttctcacaatagttattcttttacatgttttag 39508325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 9793823 - 9793741
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||| ||||||| ||||||||    
T  9793823 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcccctttttacaatagttatccttttacttgttttag 9793741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 41929339 - 41929421
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |  |||| ||||| ||||||||||||||||    
T  41929339 gcctgtttgaaatagtttttgttttcagtttttgaaatatgcaagttctcttttcgcaatagttatccttttacatgttttag 41929421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 9913806 - 9913882
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| ||| | ||| |||||| |||||||||||||||    
T  9913806 ttgaaatagtttttgtttttagtttttgaaatatacaagttctcatctcataatagttatctttttacatgttttag 9913882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 25081765 - 25081845
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgtttt 92  Q
    ||||| |||||||||||||||||||||| |||||||||||||||| | |||||| ||||| |||||| ||||| |||||||    
T  25081765 gcctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcacaatagttatcattttatatgtttt 25081845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 25139734 - 25139814
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgtttt 92  Q
    ||||| |||||||||||||||||||||| |||||||||||||||| | |||||| ||||| |||||| ||||| |||||||    
T  25139734 gcctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcacaatagttatcattttatatgtttt 25139814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 20815677 - 20815748
Alignment:
Q  22 aaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgtttt 92  Q
    |||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||| ||||| |||||||    
T  20815677 aaatagtttttgttttcagtttttaaaatatacaagtccttttctcacaatagttatcattttatatgtttt 20815748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 20736243 - 20736167
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||||||||||||||||||| ||||||||| ||| |||||||| | | ||||| |||||| |||||||||||||||    
T  20736243 ttgaaatagtttttgttttcaatttttgaaaaatataagtcctcctttcacaatagttatcattttacatgttttag 20736167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 21020687 - 21020747
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc 79  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||  |||| ||||||    
T  21020687 ttgaaatagtttttgttttcagtttttgaaatatataagtcttcttctcgcaatagttatc 21020747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 2068967 - 2069029
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatctttt 83  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||||| |||||  |||||||||    
T  2068967 ttgaaatagtttttgttttcagtttttgaaatat--aagtcttcttctcacaatatttatctttt 2069029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 3711186 - 3711266
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaa----atatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||||||||||||||||||||||||||||    |||||||||| || || | ||||| |||||| |||||||||||||||    
T  3711186 ttgaaatagtttttgttttcagtttttgaaatatatatacaagttctattttcacaatagttatctttttacatgttttag 3711266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 41910281 - 41910216
Alignment:
Q  41 tttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttaggtttttagtctcc 107  Q
    ||||| |||||||||||||||||| | ||||| |||||| |||||||||||||||  |||||||||||    
T  41910281 tttttaaaatatacaagtcctcttttcacaatagttatcattttacatgttttag--ttttagtctcc 41910216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 36404307 - 36404231
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  36404307 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttag 36404231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 16353566 - 16353488
Alignment:
Q  27 gtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttaggtttttagtc 104  Q
    |||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||| |||||||||    
T  16353566 gtttttgttttcagtttttgaaatatacaagtcctcttttcacaatagttatccttttacatgttttagttttttagtc 16353488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 45602988 - 45603064
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||||| ||||||||||||||||    
T  45602988 ttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttatcacaatagttatccttttacatgttttag 45603064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 48944190 - 48944116
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgtttt 92  Q
    |||||||||||||| |||| || ||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  48944190 ttgaaatagtttttctttttagcttttgaaatatacaagtcctcttcttacaatagttatcattttacatgtttt 48944116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 35534489 - 35534562
Alignment:
Q  22 aaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||| |||||||||    
T  35534489 aaatagtttttgttttcagtttttgaaatatacaagtcttcttctcacaatagttatcattttatatgttttag 35534562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 39391961 - 39392037
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| | ||||| ||||| ||||||||||||||||    
T  39391961 ttgaaatagtttttgttttcagtttttgaaatatacaagttttcttttcacaatagttatccttttacatgttttag 39392037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 14201715 - 14201795
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgtta-tcttttacatgttttag 94  Q
    ||||| ||||||||||||||||||||||||||||||||||  |||||||||| | ||||| |||| |||||||||||||||||    
T  14201715 gcctgtttgaaatagtttttgttttcagtttttgaaatat--aagtcctcttttcacaatagttattcttttacatgttttag 14201795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 29360480 - 29360562
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||| |||||| | ||||| ||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||    
T  29360480 gcctgtttgaaacaatttttcttttcagtttttgaaatatacaagtcctcttctcacagtagttatccttttacatgttttag 29360562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 37115978 - 37115896
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||  |||| |||||| ||||| |||||||||    
T  37115978 gcctgtttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctcgcaatagttatcattttatatgttttag 37115896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 46487268 - 46487349
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||| ||||| |||||| ||||| |||||||||    
T  46487268 gcctgtttgaaatagttttt-ttttcagtttttgaaatatataagtcttcttctcacaatagttatcattttatatgttttag 46487349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 52742350 - 52742432
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| | ||||| |  |||| |||||| |||||||| ||||||    
T  52742350 gcctgtttgaaatagtttttgtttccagtttttgaaatatacaaattctcttatcgcaatagttatcattttacatattttag 52742432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 3618415 - 3618349
Alignment:
Q  29 ttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||||||||||||| ||||||||||||||  |||||| |||||  ||||| |||||||||||||||    
T  3618415 ttttgttttcagtttctgaaatatacaagttttcttctcacaatatttatctttttacatgttttag 3618349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 54883065 - 54883001
Alignment:
Q  31 ttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||||| |||||||||||||| |||||||||||| |||||  |||| ||||||| ||||||||    
T  54883065 ttgttttcggtttttgaaatatagaagtcctcttctcacaatatttatccttttacgtgttttag 54883001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 47599389 - 47599444
Alignment:
Q  40 gtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||||| |||||||||| ||||||||| ||||| |||||| |||||||||||||||    
T  47599389 gtttttaaaatatacaaatcctcttctcacaatagttatccttttacatgttttag 47599444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 48644538 - 48644601
Alignment:
Q  32 tgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||||||| |||||||||||||||| || |||||| |||||  ||||| |||||||||||||||    
T  48644538 tgttttcaatttttgaaatatacaaatcatcttctcacaatatttatcattttacatgttttag 48644601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 39001945 - 39002027
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||    
T  39001945 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctctttttgcaatagttatccttttacatgttttag 39002027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 794917 - 795005
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttaggtttttagtctc 106  Q
    |||||||| |||||||||||||||||||||||||||| ||| |||||| ||||| ||||| |||||||||||||||| |||||||||||    
T  794917 ttgaaatattttttgttttcagtttttgaaatatacaggtcttcttctcacaatagttatccttttacatgttttagttttttagtctc 795005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 26654032 - 26653940
Alignment:
Q  12 ggcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttaggtttttagt 103  Q
    |||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||| |||||||||||||||  ||||||||    
T  26654032 ggcctgtttgaaatagtttttgttttcaatttttgaaatatacaggtcctcttctcacaatggttatccttttacatgttttaattttttagt 26653940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 571651 - 571737
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttaggtttttagtc 104  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||| | ||| |||||| ||||||||||||||| |||||||||    
T  571651 ttgaaatagtttttgttttcagtttttgaaatatatacgtcctcttctcataatagttatcattttacatgttttagttttttagtc 571737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 1585858 - 1585938
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgtttt 92  Q
    ||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||    
T  1585858 gcctgtttgaaatagtttatgtttttagtttttgaaatatacaagtcttcttcttacaatagttatccttttacatgtttt 1585938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 11121865 - 11121937
Alignment:
Q  23 aatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||||||||||||||||||||||||||||||||||| |||||  ||||| |||||| |||||||||||||||    
T  11121865 aatagtttttgttttcagtttttgaaatatacaagtcatcttcgcacaatagttatcattttacatgttttag 11121937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 6750401 - 6750319
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||  || | ||||| |||||| |||||||||||||||    
T  6750401 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaaatccctttttcacaatagttatctttttacatgttttag 6750319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 41998970 - 41998900
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatctttt 83  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| |||||  |||||||||    
T  41998970 gcctgtttgaaatagtttttgttttcattttttgaaatatacaagtcttcttctcacaatatttatctttt 41998900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 3695405 - 3695486
Alignment:
Q  14 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||| ||| | | ||| |||||| |||||||||||||||    
T  3695405 cctgtttgaaatagtttttgttttcggtttttgaaatatacaagtccccttttcataatagttatcattttacatgttttag 3695486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 18808782 - 18808858
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    |||||||| |||||||||||||||| ||||||||||||||| |||||| ||||| ||||| |||||| |||||||||    
T  18808782 ttgaaataatttttgttttcagtttatgaaatatacaagtcttcttctcacaatagttatccttttatatgttttag 18808858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 36290612 - 36290671
Alignment:
Q  36 ttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  36290612 ttcagtttttgaaatatacaagtcctcttctgacaatagttatcattttacatgttttag 36290671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 44272443 - 44272356
Alignment:
Q  19 ttgaaatagtttttgttttcagt-ttttgaaatatacaagtcctcttcttacaattgtta-tcttttacatgttttaggtttttagtc 104  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||| | | ||| |||| | ||||||||||||||| |||||||||    
T  44272443 ttgaaatagtttttgttttcagttttttgaaatatacaagttctcttttcataatggttattattttacatgttttagttttttagtc 44272356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 4792659 - 4792593
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc 79  Q
    ||||| || |||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||    
T  4792659 gcctgtttaaaatagtttttgtttttagtttttgaaatatacaagttctcttctcacaatagttatc 4792593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 24909599 - 24909519
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgtttt 92  Q
    ||||| |||||||||||||| |||||||||||| |||||||| ||| ||||||| ||||| ||||| ||||||||| ||||    
T  24909599 gcctgtttgaaatagtttttattttcagtttttaaaatatactagttctcttctcacaatagttatccttttacatatttt 24909519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 9224909 - 9224872
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaa 56  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  9224909 ttgaaatagtttttgttttcagtttttgaaatacacaa 9224872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 67870 - 67952
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  67870 gcctgtttgaaataatttttgttttcagtttttaaaatatacaagtcctcttctaacaatagttatccttttacatgttttag 67952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 8163728 - 8163641
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttaggtttttagtctcc 107  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||  |||||||||||    
T  8163728 ttgaaatagtttttgttttctgtttttgaaatatacaagttctcttctcacaatagttatctttttacatgttttag--ttttagtctcc 8163641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 40337151 - 40337075
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||||||||||||||||||||||||| ||||||| |||||| |||||| ||||| |||||| |||||||||||||||    
T  40337151 ttgaaatagtttttgttttcagttttcgaaatatgcaagtcatcttctcacaatagttatcattttacatgttttag 40337075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 35589492 - 35589403
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttaggtttttagtctcc 107  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| | | ||| ||||| |||||| || |||||| ||||||||||||    
T  35589492 ttgaaatagtttttgttttcgatttttgaaatatacaagtcctcttttcataatagttatccttttatatattttagttttttagtctcc 35589403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 41326045 - 41326121
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||||||||||||||||| ||||||||||||||| || || |||||| ||||| ||||| ||||||||||||||||    
T  41326045 ttgaaatagtttttgttttgagtttttgaaatatataaatcttcttctcacaatagttatccttttacatgttttag 41326121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 28089153 - 28089214
Alignment:
Q  34 ttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    ||||||||||||||||||||||| || |||||||||||| |||||| |||||||||||||||    
T  28089153 ttttcagtttttgaaatatacaaatcatcttcttacaatagttatcattttacatgttttag 28089214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 2362467 - 2362381
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttaggtttttagtctc 106  Q
    |||||| | |||||||||||||||||| |||||||||| || |||||| ||||| |||||| |||||| | ||||||  ||||||||||    
T  2362467 ttgaaacaatttttgttttcagtttttaaaatatacaaatcttcttctcacaatagttatcattttacttattttag--ttttagtctc 2362381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 18594 - 18512
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttat-cttttacatgttttag 94  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  18594 gcctgtttgaaatagtttttggttttagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttag 18512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 11323 - 11370
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttct 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11323 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttct 11370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 37488 - 37412
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgttatc-ttttacatgttttag 94  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||  |||| |||||| |||||||| ||||||    
T  37488 ttgaaatagtgtttgttttcggtttttgaaatatacaagtcctcttctcgcaatagttatcattttacatattttag 37412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 21474 - 21556
Alignment:
Q  13 gcctggttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttcttacaattgtta-tcttttacatgttttag 94  Q
    ||||| |||||| |||||||||||||||||||||||||||| || || |||||| ||||| |||| | |||||||||||||||    
T  21474 gcctgtttgaaacagtttttgttttcagtttttgaaatatataaatcatcttctcacaatagttattattttacatgttttag 21556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 972 - 1012
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtc 59  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  972 ttgaaatagtttttgttttcagtttttaaaatatacaagtc 1012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 1341 - 1301
Alignment:
Q  19 ttgaaatagtttttgttttcagtttttgaaatatacaagtc 59  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  1341 ttgaaatagtttttgttttcagtttttaaaatatacaagtc 1301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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