View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_12 (Length: 563)
Name: NF17166_low_12
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 23766839 - 23766521
Alignment:
| Q |
16 |
gatctatctcatgagattgaatccttattttccacttctcctagcggtggtaagaatcataagaaggtcaaacttttttaacaaattgatcatgatcatg |
115 |
Q |
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| T |
23766839 |
gatctatctcatgagattgaatccttattttccacttctccaagcggtggtaagaatcataagaaggtcaaacttttttaacaaattgatcatgatcatg |
23766740 |
T |
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| Q |
116 |
tatgtagtgaccacaaaataatatgcatgtgggagagttgttgagttgatcgacccatgacatatctttttatttattgatcattaattactagtatatg |
215 |
Q |
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| T |
23766739 |
tatgtagtgaccacaaaataatatgcatgtgggagagttgttgagttgatcgacccatgacatatctttttatttattgatcattaattactagtatatg |
23766640 |
T |
|
| Q |
216 |
ttacgtagtacctctagtgttcatttgttagttgtagaaatttcctttgattttggatgattggatttagatcctttaattaacgcctatataaagtata |
315 |
Q |
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| T |
23766639 |
ttacgtagtacctctagtgttcatgtgttagttgtagaaatttcctttcattttggatgattggatttagatcctttaattaacgcctatataaagtata |
23766540 |
T |
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| Q |
316 |
tcttatataaatatatgtc |
334 |
Q |
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| T |
23766539 |
tcttatataaatatatgtc |
23766521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 427 - 506
Target Start/End: Complemental strand, 23766428 - 23766349
Alignment:
| Q |
427 |
gcacaaaaatatatatcttgatagatttcggacctcgatcattttgtaacnnnnnnncgaaaacaactcgatcattattt |
506 |
Q |
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| T |
23766428 |
gcacaaaaatatatatcttgatagatttcgaacctcgatcattttgtaacaaaaaaacgaaaacaactcgatcattattt |
23766349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 491 - 544
Target Start/End: Complemental strand, 23766334 - 23766281
Alignment:
| Q |
491 |
aactcgatcattatttttgttaaccctcgtatataagttcttataatttggagt |
544 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23766334 |
aactcgatcattatttttgttaaccctcgtatataagttcttataatttggagt |
23766281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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