View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_121 (Length: 223)
Name: NF17166_low_121
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_121 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 11666589 - 11666792
Alignment:
| Q |
1 |
ggggttgctaatgacatcattaaccacatcataagcatcaccaaatctgtaacttgcattgggaagttgcttccccaaatcatttactaccttacttgaa |
100 |
Q |
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| T |
11666589 |
ggggttgctaatgacatcattaaccacatcataagcatcaccaaatctgtagcttgcattgggaagttgcttccccaaatcatttactaccttacttgaa |
11666688 |
T |
|
| Q |
101 |
gctttgttaaagctaagagctaacttgtttgttttttcttgacaattcccagatgtactaagcactctttgaagaggaatgcagcccattgggcccagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
11666689 |
gctttgttaaagctaagagctaacttgtttgttttttcttgacaattcccagatgtactaagcactctttgaaggggaatacagcccattgggccaagcc |
11666788 |
T |
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| Q |
201 |
caaa |
204 |
Q |
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|||| |
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| T |
11666789 |
caaa |
11666792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 45014687 - 45014509
Alignment:
| Q |
26 |
acatcataagcatcaccaaatctgtaacttgcattgggaagttgcttccccaaatcatttactaccttacttgaagctttgttaaagctaagagctaact |
125 |
Q |
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|||||||| ||||| |||||||| ||| ||| || |||||||||||| |||| |||| || || | |||||||||||| |||||||||||||| | | |
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| T |
45014687 |
acatcatatgcatctccaaatctataatttgagttaggaagttgcttcaccaagtcatctattagttcacttgaagctttattaaagctaagagccagtt |
45014588 |
T |
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| Q |
126 |
tgtttgttttttcttgacaattcccagatgtactaagcactctttgaagaggaatgcagcccattgggcccagcccaaa |
204 |
Q |
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| T |
45014587 |
tgtttacactttctcgacaatttcctgttgtagtaagtaccctttgaagtggaatgcatcccattggacccagcccaaa |
45014509 |
T |
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