View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_low_122 (Length: 218)

Name: NF17166_low_122
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_low_122
NF17166_low_122
[»] scaffold0288 (1 HSPs)
scaffold0288 (1-200)||(3694-3893)
[»] chr8 (3 HSPs)
chr8 (1-155)||(1674229-1674383)
chr8 (12-155)||(20863829-20863972)
chr8 (9-155)||(16686250-16686396)
[»] chr5 (2 HSPs)
chr5 (1-155)||(28000074-28000228)
chr5 (1-156)||(24103001-24103156)
[»] chr6 (32 HSPs)
chr6 (10-155)||(4480696-4480841)
chr6 (12-152)||(4504383-4504523)
chr6 (9-152)||(4585642-4585785)
chr6 (10-152)||(4592237-4592379)
chr6 (10-200)||(4625909-4626099)
chr6 (10-155)||(4617025-4617170)
chr6 (1-156)||(4267141-4267296)
chr6 (10-156)||(3171743-3171889)
chr6 (1-155)||(4613693-4613847)
chr6 (10-155)||(4601792-4601937)
chr6 (10-152)||(4490339-4490481)
chr6 (1-155)||(4516324-4516478)
chr6 (10-156)||(4299730-4299870)
chr6 (9-152)||(4570978-4571121)
chr6 (10-156)||(4256596-4256742)
chr6 (1-155)||(4579435-4579589)
chr6 (1-155)||(4505860-4506014)
chr6 (9-155)||(4563714-4563860)
chr6 (10-156)||(4622144-4622290)
chr6 (1-152)||(4469809-4469960)
chr6 (9-155)||(4557128-4557274)
chr6 (9-155)||(4560509-4560655)
chr6 (3-155)||(4515098-4515250)
chr6 (12-139)||(4568072-4568202)
chr6 (9-155)||(4461126-4461272)
chr6 (9-155)||(4574311-4574457)
chr6 (34-156)||(4260162-4260284)
chr6 (21-155)||(4492958-4493092)
chr6 (1-154)||(4598175-4598328)
chr6 (52-154)||(4392052-4392154)
chr6 (93-155)||(4606958-4607020)
chr6 (1-37)||(4457715-4457751)
[»] chr7 (1 HSPs)
chr7 (1-161)||(3086417-3086577)
[»] scaffold0477 (1 HSPs)
scaffold0477 (10-157)||(4670-4817)
[»] chr3 (1 HSPs)
chr3 (34-155)||(1281117-1281238)


Alignment Details
Target: scaffold0288 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3694 - 3893
Alignment:
1 agaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccagg 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
3694 agaagctagtcaatgaattgacggtgggagagaaaggaaagaagatgaggcaaaaggccgtggagttaaagaagaaggcagaggagaacactagaccagg 3793  T
101 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaatgttaacttaaaatgtggttgtgtattcatcgatatcctcttgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3794 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaatgttaacttaaaatgtggttgtgtattcatcgatatcctcttgat 3893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 1674383 - 1674229
Alignment:
1 agaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccagg 100  Q
    |||||||  ||||||||||||||||||||||||| ||||| |||||||||||||||||| | || || ||||||||||||||||||||||||||||||||    
1674383 agaagcttatcaatgaattgatggtgggagagaatggaaaaaagatgaggcaaaaggccatggaattgaagaagaaggcagaggagaacactagaccagg 1674284  T
101 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    |||| |||||||||||||| |||||||||| |||||||| || ||||||||||||    
1674283 tggttgttcatacatgaacttggacaaagtgattaaggaagtgttgcttaaacaa 1674229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 20863829 - 20863972
Alignment:
12 aatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcat 111  Q
    |||||||||||||||||||||||||||| || ||||||||||||| |    ||||| |||||||||||||||||| |||| ||||| |  ||| ||||||    
20863829 aatgaattgatggtgggagagaaaggaaggaggatgaggcaaaagacaaatgagttgaagaagaaggcagaggaggacacaagaccggaaggtggttcat 20863928  T
112 acatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    | |||||| |||||||||| ||||||||||| ||||||||||||    
20863929 atatgaacttggacaaagtgattaaggaggtgttgcttaaacaa 20863972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 16686250 - 16686396
Alignment:
9 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgtt 108  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    | ||  |  | | |||||  || ||  || | ||||| |||||| |||    
16686250 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaagataattgaactgcaaatgaaggtggacgaagacccgagacctggtggttgtt 16686349  T
109 catacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    ||||||||||| |||| ||||| |||| |||||||||||||||||||    
16686350 catacatgaacttggaaaaagtgattatggaggttttgcttaaacaa 16686396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 28000074 - 28000228
Alignment:
1 agaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccagg 100  Q
    |||||||  ||||||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||    
28000074 agaagcttatcaatgaattgatggtgggagagaatggaaaaaagatgaggcaaaaggccatggagttgaagaaaaaggcagaggagaacactagaccagg 28000173  T
101 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    |||| |||||||||||||| |||||||||| |||||||| || ||| ||||||||    
28000174 tggttgttcatacatgaacttggacaaagtgattaaggaagtgttgtttaaacaa 28000228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 24103156 - 24103001
Alignment:
1 agaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccagg 100  Q
    ||||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||| | | ||||| |||||||||||||| |||||||| ||| | ||    
24103156 agaagttagtcaatgaattgatggtgggagagaacggaaagacgatgaagcaaaaggtcttggagttcaagaagaaggcagaagagaacacaagatctgg 24103057  T
101 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaat 156  Q
    ||||  ||||||||||||| ||||||||||||||||||||||  ||||||||||||    
24103056 tggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaat 24103001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 4480841 - 4480696
Alignment:
10 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttc 109  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||| | ||||| ||||||| |||||||||| |||| ||||| |||||| ||||    
4480841 tcaatgaattgttggtgggagagaaaggaaagaagatgaagcaaaaggccatggagttgaagaagatggcagaggaggacacaagacctggtggttgttc 4480742  T
110 atacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    |||||||||| |||||||||| ||||||||||| ||||||||||||    
4480741 atacatgaacttggacaaagtgattaaggaggtcttgcttaaacaa 4480696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 4504383 - 4504523
Alignment:
12 aatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| |||| ||||  |||||| ||||||    
4504383 aatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggaggacacaagacttggtggttgttcat 4504482  T
112 acatgaacctggacaaagttattaaggaggttttgcttaaa 152  Q
    |||||||| |||||||||| |||||||| || |||||||||    
4504483 acatgaacttggacaaagtgattaaggacgtcttgcttaaa 4504523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 4585785 - 4585642
Alignment:
9 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgtt 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||| ||||||||||| |||||| |||| ||||| || ||| |||    
4585785 gtcaatgaattgatggtgggagagaatggaaagaagatgaggcaaaaggcaatcgagttgaagaagaaggcggaggaggacacgagacctggaggttgtt 4585686  T
109 catacatgaacctggacaaagttattaaggaggttttgcttaaa 152  Q
    ||||||| ||| |||| ||||| |||||||||||||||||||||    
4585685 catacataaacttggaaaaagtgattaaggaggttttgcttaaa 4585642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 4592379 - 4592237
Alignment:
10 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttc 109  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||| ||||||||||||||||||||||| ||||| || ||| ||||    
4592379 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcagaggagaacacgagacctggaggttgttc 4592280  T
110 atacatgaacctggacaaagttattaaggaggttttgcttaaa 152  Q
    ||| |||||| |||||||| | || |||||||| |||||||||    
4592279 atatatgaacttggacaaattgatcaaggaggtgttgcttaaa 4592237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 4626099 - 4625909
Alignment:
10 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttc 109  Q
    |||||| ||||||||  ||||| || |||||||||||||||||||||||| | ||||| |||||||||||||||||||||| ||| || |||||| ||||    
4626099 tcaatgcattgatggcaggagataacggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacattagtcccggtggttgttc 4626000  T
110 atacatgaacctggacaaagttattaaggaggttttgcttaaacaatgttaacttaaaatgtggttgtgtattcatcgatatcctcttgat 200  Q
    |||||||||  |||| ||| | ||||| || || ||||||||||||| |||  |||||||||||||||||||||||| ||  |||||||||    
4625999 atacatgaatatggataaactgattaatgatgtcttgcttaaacaatattagattaaaatgtggttgtgtattcatcaatcccctcttgat 4625909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 4617170 - 4617025
Alignment:
10 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttc 109  Q
    |||||||| |||| |  ||||| ||||||||||| |||| |||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||    
4617170 tcaatgaagtgatagccggagataaaggaaagaaaatgaagcaaaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttc 4617071  T
110 atacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    |||||||||| || |||||||||||||||| || ||||||||||||    
4617070 atacatgaacttgaacaaagttattaaggatgtgttgcttaaacaa 4617025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 4267141 - 4267296
Alignment:
1 agaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccagg 100  Q
    ||||| |||||||||||||||||||||||||||||||||| | ||||| |||||| | | | ||||| |||| ||||||||| |||||||| ||||| ||    
4267141 agaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaggaaggcagaagagaacacaagacctgg 4267240  T
101 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaat 156  Q
    ||||  ||||||||||||| ||||||||||||||||||||||  ||||||||||||    
4267241 tggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaat 4267296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 3171889 - 3171743
Alignment:
10 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttc 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||| | || |||   |||||| ||||    
3171889 tcaacgaattgatggtgggagagaaaggaaagaagatgaggcaaagggccatggagttgaagaagaaggcagaggaggatacaagatttggtggttgttc 3171790  T
110 atacatgaacctggacaaagttattaaggaggttttgcttaaacaat 156  Q
    |||||||||| |||| ||||| ||||||||||| |||||||||||||    
3171789 atacatgaacttggataaagtgattaaggaggtcttgcttaaacaat 3171743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 4613693 - 4613847
Alignment:
1 agaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccagg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||  | ||||| |||||||||||||||||| |||| ||||||||    
4613693 agaagctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcagaggaggacacgagaccagg 4613792  T
101 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
     ||| ||||||| |||||| |||||||||| || || |||||  |||| ||||||    
4613793 aggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaa 4613847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 4601937 - 4601792
Alignment:
10 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttc 109  Q
    |||||||| |||| |  ||||| ||||| ||||||||||||||||||||| | ||||| ||||||| |||| |||||| |||||||| ||||||| ||||    
4601937 tcaatgaagtgatagccggagataaaggcaagaagatgaggcaaaaggccatggagttgaagaagatggcaaaggagagcactagactaggtggttgttc 4601838  T
110 atacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||    
4601837 atacaagaacctggacaaagttattaaggaggtgttgcttaaacaa 4601792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 4490339 - 4490481
Alignment:
10 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    ||||| ||||||||||||| |||| |||| ||||  |||||| ||||    
4490339 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggcgacggagttgaagaagaaggcagcggaggacacgagactcggtggtagttc 4490438  T
110 atacatgaacctggacaaagttattaaggaggttttgcttaaa 152  Q
    |||||||||| |||||||||| |||||||| ||  ||||||||    
4490439 atacatgaacttggacaaagtgattaaggatgtcatgcttaaa 4490481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 4516478 - 4516324
Alignment:
1 agaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccagg 100  Q
    |||||||  |||||||||| ||||||||||| ||||||||||||||||||||||||||| | || || |||||||||||||||||| |||| ||||||||    
4516478 agaagctgatcaatgaattaatggtgggagataaaggaaagaagatgaggcaaaaggccatggaattgaagaagaaggcagaggaggacacaagaccagg 4516379  T
101 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    |||| |||||||  ||||| |||| ||||| |||||||||||  |||| ||||||    
4516378 tggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctgctcaaacaa 4516324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 4299730 - 4299870
Alignment:
10 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttc 109  Q
    ||||||||||||||||||||||||||||| | |||||||| ||||||||    |||||      ||||||||||||||||||||  ||||||||| ||||    
4299730 tcaatgaattgatggtgggagagaaaggagataagatgagacaaaaggcaagggagtt------gaaggcagaggagaacactaatccaggtggttgttc 4299823  T
110 atacatgaacctggacaaagttattaaggaggttttgcttaaacaat 156  Q
     ||||||||| ||||||||||||||||||||||| ||||||||||||    
4299824 gtacatgaacttggacaaagttattaaggaggttctgcttaaacaat 4299870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 4571121 - 4570978
Alignment:
9 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgtt 108  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||     | ||| | ||||||||||| |||||| |||| ||||| |||||| |||    
4571121 gtcaatgaattgatggtgggagataaaggaaagaagatgaggaaaaatataatggagatgaagaagaaggcggaggaggacacgagacctggtggttgtt 4571022  T
109 catacatgaacctggacaaagttattaaggaggttttgcttaaa 152  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||    
4571021 catacatgaacttggaaaaagtgattaaggaggttttgcttaaa 4570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 4256596 - 4256742
Alignment:
10 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttc 109  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||||| | | || || ||||||||| ||||| ||||||| || |||| ||||| |||    
4256596 tcaatgaattgatgtcgggagaaaaaggaaagaagatgaggcaaaaggtcatggaattgaagaagaagacagagaagaacaccagcccagctggtcattc 4256695  T
110 atacatgaacctggacaaagttattaaggaggttttgcttaaacaat 156  Q
    ||  |||||| ||||||||||||||||||||||  ||||||||||||    
4256696 attgatgaacttggacaaagttattaaggaggtcatgcttaaacaat 4256742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 4579589 - 4579435
Alignment:
1 agaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccagg 100  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||  | ||||| ||||||||||  |||||| |||| ||||| ||    
4579589 agaagctggttaatgaattgatggtgggagagaaagcaaagaagatgaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctgg 4579490  T
101 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
     ||  |||||||||||||| |||| ||||| ||||||||||| || || ||||||    
4579489 aggctgttcatacatgaacttggagaaagtgattaaggaggtgttactcaaacaa 4579435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 4506014 - 4505860
Alignment:
1 agaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccagg 100  Q
    ||||||| ||| ||||| | ||||| |||||||||||||| ||||||||| |||||| | | ||||| || |||| |||| ||||| | || ||||| ||    
4506014 agaagctggtcgatgaaattatggttggagagaaaggaaacaagatgaggaaaaaggtcatggagttgaaaaagagggcaaaggaggatacaagacctgg 4505915  T
101 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    |||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||    
4505914 tggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaa 4505860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 4563860 - 4563714
Alignment:
9 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgtt 108  Q
    |||||||||||||||   ||||||||||||||||||||| ||||||||||  | ||||| |||||||| |  ||||| ||||| ||| | || ||| |||    
4563860 gtcaatgaattgatgtcaggagagaaaggaaagaagatgcggcaaaaggcaattgagttgaagaagaaagtggaggaaaacacgagagctggaggttgtt 4563761  T
109 catacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    ||||||||||| |||||||||| || |||||||||||||||||||||    
4563760 catacatgaacttggacaaagtgatcaaggaggttttgcttaaacaa 4563714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 4622290 - 4622144
Alignment:
10 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttc 109  Q
    ||||||||||||||  |||||| ||||||||||||||||| ||||||||| | ||||| ||| |||||||||| ||||  || || || |||||| ||||    
4622290 tcaatgaattgatgtcgggagataaaggaaagaagatgagacaaaaggccatggagttgaaggagaaggcagatgagacgaccagccctggtggttgttc 4622191  T
110 atacatgaacctggacaaagttattaaggaggttttgcttaaacaat 156  Q
    |||||  ||| ||||||||||||||||||||||  ||||||||||||    
4622190 atacaacaacttggacaaagttattaaggaggtcatgcttaaacaat 4622144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 4469960 - 4469809
Alignment:
1 agaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccagg 100  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||  | | ||||| ||||||||||  |||||| | || ||||| ||    
4469960 agaagctagtcaatgaattgatggttggagagaatggaaagaagatgagggaaaagatcatggagttcaagaagaaggtggaggaggataccagacctgg 4469861  T
101 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 152  Q
     |||  |||||||| |||| |||||||||| |||||||| || |||||||||    
4469860 aggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaa 4469809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 4557274 - 4557128
Alignment:
9 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgtt 108  Q
    |||||||||||||||| ||| |||||||||||||||||| || |||||    | ||| | |||| |||||| |||||| |||| ||||| |||||| |||    
4557274 gtcaatgaattgatggagggggagaaaggaaagaagatgtggaaaaagataattgagatgaagacgaaggcggaggaggacacgagacctggtggttgtt 4557175  T
109 catacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    ||||||||||  |||| ||||| ||||||||||||||||||||||||    
4557174 catacatgaatttggaaaaagtgattaaggaggttttgcttaaacaa 4557128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 4560655 - 4560509
Alignment:
9 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgtt 108  Q
    |||||||||||||||    |||| ||||||||||||||||||||||||||| | ||| | ||||| ||||| |||| | |||| ||||| || ||| |||    
4560655 gtcaatgaattgatgtcctgagataaaggaaagaagatgaggcaaaaggccatggagctgaagaaaaaggcggaggtgtacacgagacctggaggttgtt 4560556  T
109 catacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    ||||||||||| |||| ||||| ||||||||||| ||||||||||||    
4560555 catacatgaacttggagaaagtgattaaggaggtgttgcttaaacaa 4560509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 4515098 - 4515250
Alignment:
3 aagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtg 102  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||| ||||||   | ||||| || ||||||||||| ||| |||||||||  || |    
4515098 aagcttgtcaatgaattgatggtgggagagaaaggaaataaaatgaggaaaaaggttatggagttgaaaaagaaggcagacgaggacactagacttggcg 4515197  T
103 gtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    |   ||||||| ||||| |||||||||| || |||||||| ||||||||||||    
4515198 ggtcttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaa 4515250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 4568202 - 4568072
Alignment:
12 aatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagtt---aaagaagaaggcagaggagaacactagaccaggtggtcgtt 108  Q
    |||||||| ||||||||| |||||||||| |||||||||||||||||||| |||||    ||||||||||||||| || |||| ||||| |||| |  ||    
4568202 aatgaattaatggtgggacagaaaggaaaaaagatgaggcaaaaggccgtggagttgaagaagaagaaggcagagaaggacacaagacctggtgattctt 4568103  T
109 catacatgaacctggacaaagttattaagga 139  Q
    ||||||||||| |||||||||| ||||||||    
4568102 catacatgaacttggacaaagtgattaagga 4568072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 4461272 - 4461126
Alignment:
9 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgtt 108  Q
    ||||| ||||||||||| |||||||  |||||||||||||||||||||| | | || || ||||||||||  |||||| | || ||||| || |||  ||    
4461272 gtcaacgaattgatggttggagagattggaaagaagatgaggcaaaaggtcatggaattcaagaagaaggtggaggaggataccagacctggaggtgttt 4461173  T
109 catacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    |||||| |||| |||||||||| |||||||| || ||||||||||||    
4461172 catacaagaacttggacaaagtcattaaggatgtcttgcttaaacaa 4461126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 4574457 - 4574311
Alignment:
9 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgtt 108  Q
    |||||||||||||||   ||||| ||||||||||||||||||||||| ||| | ||| | ||||||||||  |||| | |||| ||||| || ||| |||    
4574457 gtcaatgaattgatgtccggagataaaggaaagaagatgaggcaaaaagccattgagctgaagaagaaggtggaggtggacacgagacctggaggttgtt 4574358  T
109 catacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    ||||||  ||| |||| ||||| ||||||||||| ||||||||||||    
4574357 catacacaaacttggagaaagtgattaaggaggtgttgcttaaacaa 4574311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 4260162 - 4260284
Alignment:
34 aaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttat 133  Q
    |||||||||||||||||||||||| | | ||||| |||| |||||||||||||||||| || |||  ||||  |||||  |||||| |||||||||||||    
4260162 aaggaaagaagatgaggcaaaaggtcatggagttgaagaggaaggcagaggagaacaccagtccatctggttattcattgatgaacttggacaaagttat 4260261  T
134 taaggaggttttgcttaaacaat 156  Q
    |||| ||||  |||| |||||||    
4260262 taagcaggtcatgctcaaacaat 4260284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 4493092 - 4492958
Alignment:
21 atggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacc 120  Q
    ||||| |||||||||||||| |||||||||  ||| |||   ||||| || ||||||||||||||| ||||   ||| |||||| ||||||||||||||     
4493092 atggttggagagaaaggaaacaagatgaggagaaaagccacggagttgaaaaagaaggcagaggaggacacagtacctggtggttgttcatacatgaact 4492993  T
121 tggacaaagttattaaggaggttttgcttaaacaa 155  Q
    |||||||||| || ||||| || ||||||||||||    
4492992 tggacaaagtgatcaaggatgtcttgcttaaacaa 4492958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 4598328 - 4598175
Alignment:
1 agaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccagg 100  Q
    ||||||| ||||| |||||||||  |||||| ||||||||||| |||||||||||| |  | || || |||| |||||| |||||| | || ||||  ||    
4598328 agaagctggtcaacgaattgatgtcgggagataaaggaaagaaaatgaggcaaaagacaattgatttgaagatgaaggcggaggaggaaacgagacttgg 4598229  T
101 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaaca 154  Q
     ||| |||||||||||||| | || ||||| ||||||||||| || ||||||||    
4598228 aggttgttcatacatgaacttagagaaagtgattaaggaggtgtttcttaaaca 4598175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 4392052 - 4392154
Alignment:
52 aaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaa 151  Q
    |||||||  ||||||| |||||||||||| ||||| ||||  |||| ||||||  ||||| ||||||| |||||||| | ||||||||||| ||||||||    
4392052 aaaaggcgatcgagttgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaa 4392151  T
152 aca 154  Q
    |||    
4392152 aca 4392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 4606958 - 4607020
Alignment:
93 agaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 155  Q
    ||||||||||||  ||||||||||||| |||| ||||| |||||| |||||||||||||||||    
4606958 agaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaa 4607020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4457751 - 4457715
Alignment:
1 agaagctagtcaatgaattgatggtgggagagaaagg 37  Q
    ||||| ||||||||||||||||||||||||| |||||    
4457751 agaagttagtcaatgaattgatggtgggagaaaaagg 4457715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 3086577 - 3086417
Alignment:
1 agaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccagg 100  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||||||||||| | ||  |||||||||||||| ||||| |||||||| ||    ||    
3086577 agaagctgatcaatgaattgatggtgggagataaaggaaagaagatgaggcaaaatgtcgcagagttaaagaagaaagcagaagagaacaccagtatcgg 3086478  T
101 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaatgttaa 161  Q
    |||| |||||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||    
3086477 tggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaaaaatattaa 3086417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 4670 - 4817
Alignment:
10 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttc 109  Q
    ||||||||||||||  |||||| ||||||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||| ||  | |||||  ||||    
4670 tcaatgaattgatgtcgggagataaaggaatgaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctgttc 4769  T
110 atacatgaacctggacaaagttattaaggaggttttgcttaaacaatg 157  Q
    |||||||||| |||||||||| |||||||||||  |||||||||||||    
4770 atacatgaacttggacaaagtgattaaggaggtcatgcttaaacaatg 4817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 1281238 - 1281117
Alignment:
34 aaggaaagaagatgaggcaaaaggccgtcgagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttat 133  Q
    |||||||||| |||||  |||||||| | || || ||||||  ||| ||||||||||||||||| |||||| |||||||||||||| | |||||||| ||    
1281238 aaggaaagaatatgagagaaaaggccatggaattgaagaaggcggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgat 1281139  T
134 taaggaggttttgcttaaacaa 155  Q
    ||||||  | ||||||||||||    
1281138 taaggaaatgttgcttaaacaa 1281117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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