View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_low_124 (Length: 213)

Name: NF17166_low_124
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_low_124
NF17166_low_124
[»] chr1 (25 HSPs)
chr1 (16-195)||(10979394-10979573)
chr1 (16-194)||(11007799-11007977)
chr1 (16-195)||(11010960-11011139)
chr1 (11-192)||(10974319-10974500)
chr1 (16-194)||(11004883-11005061)
chr1 (16-195)||(11028468-11028647)
chr1 (16-194)||(10914660-10914838)
chr1 (16-194)||(11033252-11033430)
chr1 (17-195)||(10903499-10903674)
chr1 (124-194)||(10901660-10901730)
chr1 (31-186)||(9453700-9453855)
chr1 (31-192)||(9319975-9320136)
chr1 (31-173)||(8964604-8964746)
chr1 (31-176)||(9350308-9350453)
chr1 (31-184)||(9399713-9399866)
chr1 (31-186)||(9432713-9432868)
chr1 (11-101)||(9233915-9234005)
chr1 (16-89)||(8999839-8999912)
chr1 (31-192)||(9318166-9318327)
chr1 (31-173)||(8873944-8874086)
chr1 (31-98)||(9464285-9464352)
chr1 (31-98)||(9488717-9488784)
chr1 (136-186)||(9255009-9255059)
chr1 (11-101)||(9384389-9384479)
chr1 (139-192)||(9082523-9082576)
[»] chr6 (1 HSPs)
chr6 (31-192)||(15927072-15927233)
[»] chr5 (1 HSPs)
chr5 (61-101)||(40225245-40225285)
[»] chr4 (1 HSPs)
chr4 (26-71)||(27692614-27692659)
[»] chr2 (1 HSPs)
chr2 (61-101)||(7945893-7945933)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 10979573 - 10979394
Alignment:
Q  16 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10979573 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtccta 10979474  T
Q  116 cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgtt 195  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979473 cagataaaagctttgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgtt 10979394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 11007977 - 11007799
Alignment:
Q  16 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11007977 atgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtccta 11007878  T
Q  116 cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgt 194  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  11007877 cagataaaagcattgtgtcattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatgt 11007799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 11011139 - 11010960
Alignment:
Q  16 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  11011139 atgaaaattctacactttgatataaagcctcataacattcttcttgatgaaaatttcaatccaaaagtttctgattttggactagctagactttgtccta 11011040  T
Q  116 cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgtt 195  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  11011039 cagataaaagcattgtgtcattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgtt 11010960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 10974500 - 10974319
Alignment:
Q  11 gtgagatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctg 110  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  10974500 gtgatatgaaaattctacactttgatataaagcctcataccatccttcttgatgaatatttcaatccaaaagtttctgattttggacttgctagactttg 10974401  T
Q  111 tcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaat 192  Q
    |||||||||||||||||||||| |||||||||| |||||||| || |||||||||||||| |||||||| ||||||||||||    
T  10974400 tcctacagataaaagcattgtgccattaactgctgcaagaggaacgattggatacatggcccctgaactgttctacagaaat 10974319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 11004883 - 11005061
Alignment:
Q  16 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||  | | |||||    
T  11004883 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggattagctagggtttctccta 11004982  T
Q  116 cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgt 194  Q
    |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  11004983 cagacaaaagcattgtgtccttaactgcagcaagaggaaccattggatacatggcccctgaactattctacagaaatgt 11005061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 11028468 - 11028647
Alignment:
Q  16 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||    
T  11028468 atgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctagactttgtccta 11028567  T
Q  116 cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgtt 195  Q
    ||| ||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||||||    
T  11028568 caggtaatagcattgtgtcattaactgcagcaagaagaaccattggatacatggcccctgaactattctatagaaatgtt 11028647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 10914838 - 10914660
Alignment:
Q  16 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || | |||||    
T  10914838 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagccaggctttctccta 10914739  T
Q  116 cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgt 194  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||| ||||||| ||||||||    
T  10914738 cagataaaagcattgtgtcattaactgcagcaagaggaaccatcggatatatggcccctgaattattctatagaaatgt 10914660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 11033430 - 11033252
Alignment:
Q  16 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||    
T  11033430 atgaaaattctacactttgacataaagcctcataacatccttcttgatgagaatttcaacccaaaagtttctgattttggactagctagactttgtccta 11033331  T
Q  116 cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgt 194  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |||||||    
T  11033330 cagataaaagcattgtcacattaactgcagcaagaggaaccattggatatatggcccctgaactattctaccgaaatgt 11033252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 10903674 - 10903499
Alignment:
Q  17 tgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctac 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||    
T  10903674 tgaaaattctacactttgatataaagcctcataacattcttcttgatgaaagtttcaatccaaaagtttctgattttggacttgccagactttctcctac 10903575  T
Q  117 agataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgtt 195  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    || |||||||| |||||||||||||||    
T  10903574 agataaaagcattgtgtcattaactgcagcaagaggaaccattggata---tgcccctgaacttttctacagaaatgtt 10903499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 10901730 - 10901660
Alignment:
Q  124 agcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgt 194  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||    
T  10901730 agcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgt 10901660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 9453700 - 9453855
Alignment:
Q  31 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg 130  Q
    |||||||| |||||||| |||||||||||||| ||||||||||  || |||||||| |||||||| ||||| |  || | |||||  || || |||||||    
T  9453700 tttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcagattttggtcttgcaaagctttatcctattgacaatagcattg 9453799  T
Q  131 tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctac 186  Q
    |  | || || ||||||||||| || ||||| ||||||||||||||| | ||||||    
T  9453800 tcgctttgacagcagcaagaggaacaattggttacatggctcctgaattgttctac 9453855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 9320136 - 9319975
Alignment:
Q  31 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg 130  Q
    |||||||| ||||| |||||||||||||||||||| || || |  || |||||||| || ||||| |||||||  || | |||||  || |  |||||||    
T  9320136 tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgctaagctttatcctaatgagattagcattg 9320037  T
Q  131 tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaat 192  Q
    |  | ||||||||||||||||| || |||||||| |||||||||||| | ||||||| ||||    
T  9320036 tcactttaactgcagcaagaggaacaattggatatatggctcctgaattgttctacaaaaat 9319975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 173
Target Start/End: Complemental strand, 8964746 - 8964604
Alignment:
Q  31 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg 130  Q
    |||||||| |||||||| ||||||||||||||||| |||||||  |||||||| ||||| |||||| | ||||  || | ||||  ||| || |||||||    
T  8964746 tttgatattaagcctcacaacatccttcttgatgagaatttcaccccaaaagtctctgactttggattggctaagctatatcctgtagagaatagcattg 8964647  T
Q  131 tgtcattaactgcagcaagagggaccattggatacatggctcc 173  Q
    |  || | || || |||||||| ||||||||||| ||||||||    
T  8964646 tcacaatgacagcggcaagaggtaccattggatatatggctcc 8964604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 176
Target Start/End: Complemental strand, 9350453 - 9350308
Alignment:
Q  31 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg 130  Q
    |||||||| ||||| |||||||||||||||||||| || || |  || |||||||| || ||||| |||||||  || | |||||  || |  |||||||    
T  9350453 tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgctaagctttatcctaatgagattagcattg 9350354  T
Q  131 tgtcattaactgcagcaagagggaccattggatacatggctcctga 176  Q
    |  | ||||||||||||||||| || |||||||| |||||||||||    
T  9350353 tcactttaactgcagcaagaggaacaattggatatatggctcctga 9350308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 9399866 - 9399713
Alignment:
Q  31 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg 130  Q
    |||||||| |||||||| |||||||||||||| ||||||||||  || |||||||| || ||||| ||||| |  || | |||||  || ||||||||||    
T  9399866 tttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcggactttggtcttgcaaagctttatcctattgacaaaagcattg 9399767  T
Q  131 tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattct 184  Q
       | || |  ||||||||||| || ||||| ||||||||||||||||| ||||    
T  9399766 ccactttgatggcagcaagaggaacaattggttacatggctcctgaactgttct 9399713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 9432713 - 9432868
Alignment:
Q  31 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg 130  Q
    |||||||| |||||||| ||||||||||| || ||||||||||  || |||||||| || ||||| ||||| |  || | |||||  || ||||||||||    
T  9432713 tttgatattaagcctcacaacatccttctggacgaaaatttcatccctaaagtttcggactttggtcttgcaaagctttatcctattgacaaaagcattg 9432812  T
Q  131 tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctac 186  Q
       | || || ||||||||||| || ||||| ||||||||||||||| | ||||||    
T  9432813 ccactttgacggcagcaagaggaacaattggttacatggctcctgaattgttctac 9432868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 9233915 - 9234005
Alignment:
Q  11 gtgagatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 101  Q
    |||| ||| |||||||||| |||||||| ||||||||||| || ||||| || ||| |||||  |||||| ||||| ||||||||||||||    
T  9233915 gtgatatgcaaattctacattttgatatcaagcctcataatattcttctagacgaagatttcgttccaaaggtttcggattttggacttgc 9234005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 8999912 - 8999839
Alignment:
Q  16 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctga 89  Q
    ||||| ||| |||| |||||||| |||||||| |||||||||||||||||||| ||||  |||||||| |||||    
T  8999912 atgaagattttacattttgatatcaagcctcacaacatccttcttgatgaaaacttcacaccaaaagtctctga 8999839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 9318166 - 9318327
Alignment:
Q  31 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg 130  Q
    |||||||| ||||| |||||||||||||||||||| || || | ||| |||||||| || ||||| || || |  || | ||| |  || |  |||||||    
T  9318166 tttgatatcaagccccataacatccttcttgatgagaactttattcccaaagtttcagactttggtctggcaaagctttatccaaatgacattagcattg 9318265  T
Q  131 tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaat 192  Q
    |  | ||||||||||| ||||| || ||||||||||||||||||||| | ||||||| ||||    
T  9318266 tcactttaactgcagctagaggaacaattggatacatggctcctgaattgttctacaaaaat 9318327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 173
Target Start/End: Original strand, 8873944 - 8874086
Alignment:
Q  31 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg 130  Q
    |||||||| |||||||| ||||||||||||||||| || || | ||| ||||| ||||| |||||| | ||||  || | ||||   || || |||||||    
T  8873944 tttgatattaagcctcacaacatccttcttgatgagaactttactccgaaagtctctgactttggattggctaagctatatcctgtggagaatagcattg 8874043  T
Q  131 tgtcattaactgcagcaagagggaccattggatacatggctcc 173  Q
    |  || | ||||| |||||||| ||||||||||| ||||||||    
T  8874044 tcacaatgactgcggcaagaggtaccattggatatatggctcc 8874086  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 9464352 - 9464285
Alignment:
Q  31 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggact 98  Q
    ||||| ||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| ||||    
T  9464352 tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcggatttttgact 9464285  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 9488784 - 9488717
Alignment:
Q  31 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggact 98  Q
    ||||| ||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| ||||    
T  9488784 tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcagattttagact 9488717  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 9255009 - 9255059
Alignment:
Q  136 ttaactgcagcaagagggaccattggatacatggctcctgaactattctac 186  Q
    ||||| |||||||| ||||| ||||||||||||||||||||| | ||||||    
T  9255009 ttaaccgcagcaagggggacaattggatacatggctcctgaattgttctac 9255059  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 9384479 - 9384389
Alignment:
Q  11 gtgagatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 101  Q
    |||| ||| |||||||||| |||||||| ||||||||||| || ||||| || ||| | ||   |||||| ||||| ||||||||||||||    
T  9384479 gtgatatgcaaattctacattttgatatcaagcctcataatattcttctagacgaagagtttgttccaaaggtttcggattttggacttgc 9384389  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 9082523 - 9082576
Alignment:
Q  139 actgcagcaagagggaccattggatacatggctcctgaactattctacagaaat 192  Q
    |||||||||||||| || |||||||| |||||||||||  ||||||||| ||||    
T  9082523 actgcagcaagaggtacaattggatatatggctcctgagttattctacaaaaat 9082576  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 15927072 - 15927233
Alignment:
Q  31 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg 130  Q
    ||||| || ||||| |||||||||||||||||||| || || |  || |||||||| || ||||| ||||| |  || | |||||  || |  || ||||    
T  15927072 tttgacatcaagccccataacatccttcttgatgagaactttatccccaaagtttccgactttggtcttgcaaagctttatcctaatgagattagtattg 15927171  T
Q  131 tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaat 192  Q
    |  | ||||||||||||||||| || ||||||||||||||||||||| ||||||||| ||||    
T  15927172 tcactttaactgcagcaagaggaacgattggatacatggctcctgaattattctacaaaaat 15927233  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 40225285 - 40225245
Alignment:
Q  61 gatgaaaatttcaatccaaaagtttctgattttggacttgc 101  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  40225285 gatgaaaatttcaatccaaaactctctgattttggacttgc 40225245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 27692659 - 27692614
Alignment:
Q  26 tacactttgatataaagcctcataacatccttcttgatgaaaattt 71  Q
    |||||||||||||||| ||||||||||| |||||||| || |||||    
T  27692659 tacactttgatataaaacctcataacattcttcttgacgagaattt 27692614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 7945893 - 7945933
Alignment:
Q  61 gatgaaaatttcaatccaaaagtttctgattttggacttgc 101  Q
    ||||||||||||||||||||  ||||||||||||| |||||    
T  7945893 gatgaaaatttcaatccaaagctttctgattttggtcttgc 7945933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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