View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_low_125 (Length: 211)

Name: NF17166_low_125
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_low_125
NF17166_low_125
[»] scaffold0288 (2 HSPs)
scaffold0288 (50-200)||(4091-4239)
scaffold0288 (1-52)||(3899-3950)


Alignment Details
Target: scaffold0288 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 4091 - 4239
Alignment:
Q  50 taacacaaggaccaatatcggttcataagcatcttacattacaagcaaatattgatcaatttcacaagctactatacacactcaacagaagtgcagaaac 149  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4091 taacacaaggaccaatatcggttcataagcatcttac--tacaagcaaatattgatcaatttcacaagctactatacacactcaacagaagtgcagaaac 4188  T
Q  150 atacacattatttgcgaacgcaatttggaccgcgacattaaaacttttcat 200  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  4189 atacacattatatgcgaacgcaatttagaccgcgacattaaaacttttcat 4239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3899 - 3950
Alignment:
Q  1 ttgacagtcaatcaaatatgatacatttagttatttgagttgaccaatataa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3899 ttgacagtcaatcaaatatgatacatttagttatttgagttgaccaatataa 3950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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