View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_low_128 (Length: 203)

Name: NF17166_low_128
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_low_128
NF17166_low_128
[»] chr5 (15 HSPs)
chr5 (18-167)||(13855925-13856074)
chr5 (24-167)||(12104608-12104751)
chr5 (18-163)||(10105801-10105946)
chr5 (16-163)||(10212328-10212475)
chr5 (18-163)||(10109214-10109359)
chr5 (18-163)||(10209779-10209924)
chr5 (18-164)||(9674768-9674918)
chr5 (18-154)||(12109396-12109533)
chr5 (18-164)||(10102715-10102862)
chr5 (113-174)||(10215979-10216040)
chr5 (21-75)||(37278735-37278789)
chr5 (16-73)||(9660283-9660340)
chr5 (18-73)||(10215929-10215984)
chr5 (18-76)||(3467668-3467726)
chr5 (103-153)||(10219135-10219185)
[»] chr1 (11 HSPs)
chr1 (18-146)||(10542321-10542450)
chr1 (18-79)||(42202435-42202496)
chr1 (18-79)||(42211303-42211364)
chr1 (18-76)||(43014372-43014430)
chr1 (18-76)||(45316457-45316515)
chr1 (18-79)||(42409594-42409655)
chr1 (16-79)||(42217276-42217339)
chr1 (18-80)||(2176362-2176424)
chr1 (18-75)||(45151994-45152051)
chr1 (18-77)||(42417640-42417699)
chr1 (19-75)||(51795018-51795074)
[»] chr8 (5 HSPs)
chr8 (18-154)||(31558260-31558396)
chr8 (18-76)||(31555175-31555233)
chr8 (18-76)||(31878236-31878294)
chr8 (22-69)||(13568429-13568476)
chr8 (16-76)||(4042243-4042303)
[»] chr4 (6 HSPs)
chr4 (18-76)||(17889422-17889480)
chr4 (18-80)||(25698804-25698866)
chr4 (18-76)||(49588200-49588258)
chr4 (22-62)||(20918685-20918725)
chr4 (18-57)||(36790854-36790893)
chr4 (18-61)||(46362545-46362588)
[»] chr3 (2 HSPs)
chr3 (18-76)||(21884102-21884160)
chr3 (18-79)||(46446211-46446272)
[»] chr7 (4 HSPs)
chr7 (16-71)||(3641211-3641266)
chr7 (18-76)||(3647026-3647084)
chr7 (18-76)||(3649475-3649533)
chr7 (18-67)||(3657601-3657650)
[»] chr6 (2 HSPs)
chr6 (18-76)||(33891592-33891650)
chr6 (21-75)||(27868671-27868725)
[»] chr2 (4 HSPs)
chr2 (18-81)||(5900520-5900583)
chr2 (18-67)||(26568347-26568396)
chr2 (18-49)||(43633449-43633480)
chr2 (21-74)||(2341338-2341391)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 13856074 - 13855925
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||  | ||||||||||| || ||  ||||||||||| |||    
T  13856074 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcactcggctccgtgcttgtaagaggtagaggtcctttctttttatatgtgaactg 13855975  T
Q  118 catagtttagtttatgaattggtcgatgttggactttatcagacacccac 167  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  13855974 catagtttagtttatgaattggttgatgtgggactctatcagacacccac 13855925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 12104608 - 12104751
Alignment:
Q  24 tttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagt 123  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  | || |||||||| || ||  ||||||||||||||||||| |    
T  12104608 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttacaagaagtagaggtcctatctttttatatgtgagctgcataat 12104707  T
Q  124 ttagtttatgaattggtcgatgttggactttatcagacacccac 167  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  12104708 ttagtttatgaattggtcgatgtgggactttattagacacccac 12104751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 10105946 - 10105801
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||  | |||||| | || ||| ||||||||  |||||    
T  10105946 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgcttaaaaaaagtagagatcctttcattttatatgaaagctg 10105847  T
Q  118 catagtttagtttatgaattggtcgatgttggactttatcagacac 163  Q
    |||||||||||||||||| ||| |||||| ||||||| ||||||||    
T  10105846 catagtttagtttatgaactgggcgatgtgggactttgtcagacac 10105801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 10212328 - 10212475
Alignment:
Q  16 cagtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |   ||||||||||||  | ||| ||||||||||| |    
T  10212328 cagtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtacctattggaggtagaggtcatttcattttatatgtgatc 10212427  T
Q  116 tgcatagtttagtttatgaattggtcgatgttggactttatcagacac 163  Q
     ||||||||||||||||| |||||| ||||| |||| |||||||||||    
T  10212428 agcatagtttagtttatgcattggtagatgtgggacattatcagacac 10212475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 10109359 - 10109214
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgct-ttaaggaggtagaggtgctgtcaatttatatgtgagct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |  ||| |||||| || ||  ||||||||  ||||    
T  10109359 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgatctttacaagg-agaggttctatctttttatatgcaagct 10109261  T
Q  117 gcatagtttagtttatgaattggtcgatgttggactttatcagacac 163  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  10109260 gcatagtttagtttatgaattgggcgatgtgggactttatcagacac 10109214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 10209779 - 10209924
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctg 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| |  | | | |||| || ||  ||||||||  |||||    
T  10209779 gtattctttagtaaaaggcgaaagaatagttcgctatgtgttcatcacacggctccgtgattttaacaaggataggtcctatctttttatatgcaagctg 10209878  T
Q  118 catagtttagtttatgaattggtcgatgttggactttatcagacac 163  Q
    |||||||||||||||||||||| |||||| ||||||||| ||||||    
T  10209879 catagtttagtttatgaattgggcgatgtgggactttattagacac 10209924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 9674768 - 9674918
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacaca---cggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgag 114  Q
    |||||||||||||||||||||||||||||||| || |||||||| ||||   ||||||||||||||||  |||||||||| || | | ||||||||||||    
T  9674768 gtattctttagtaaaaggcgaaagaatagttcactttgtgatcatcacacggcggctccgtgctttaaaaaggtagaggttctttaattttatatgtgag 9674867  T
Q  115 ctgcatagtttagtttatgaattggtcgatgttggacttta-tcagacacc 164  Q
    | ||||||||||| ||||| |||||  ||||| |||||||| |||||||||    
T  9674868 cagcatagtttagcttatgcattggaggatgtgggactttagtcagacacc 9674918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 12109396 - 12109533
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctg 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||  |||||||||||||   ||||||||||||  | ||| ||||||| ||||  |    
T  12109396 gtattctttagtaaaaggcgaaagaatagtttgctatgtgatcatcaggcggctccgtgcttattggaggtagaggtcatttcattttatatatgagaag 12109495  T
Q  118 catagttt-agtttatgaattggtcgatgttggacttt 154  Q
    | |||||| |||||||| |||||||||||| |||||||    
T  12109496 cttagtttcagtttatgcattggtcgatgtgggacttt 12109533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 10102862 - 10102715
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt--gctttaaggaggtagaggtgctgtcaatttatatgtgagc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    |||||  || | |||||  | ||  |||||| || |||    
T  10102862 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacagctccgtaaattttaacaagct-gaggtcttttcgttttataagtaagc 10102764  T
Q  116 tgcatagtttagtttatgaattggtcgatgttggactttatcagacacc 164  Q
     |||||||||||||||||||||||||||||| ||| |||||| ||||||    
T  10102763 agcatagtttagtttatgaattggtcgatgtgggagtttatccgacacc 10102715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 10215979 - 10216040
Alignment:
Q  113 agctgcatagtttagtttatgaattggtcgatgttggactttatcagacacccacaggttct 174  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  10215979 agctccatagtttagtttctgaattggtcgatgtgggactttatcagacacccacatgttct 10216040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 37278735 - 37278789
Alignment:
Q  21 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 75  Q
    |||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  37278735 ttctttagtaaaaggcgaaagaatagttcgttatgtgctcatcacacggctccgt 37278789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 9660283 - 9660340
Alignment:
Q  16 cagtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctcc 73  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||||    
T  9660283 cagtattctttagtaaaaggcaaaataatagttcgctatgtgatcatcacaaggctcc 9660340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 10215929 - 10215984
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctcc 73  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||    
T  10215929 gtattctttagtaaaaggcaaaagaatagtttactatgtgatcaacacacagctcc 10215984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 3467668 - 3467726
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 76  Q
    ||||||||||||||||||||||||||||||| ||| || | ||| ||||||||| ||||    
T  3467668 gtattctttagtaaaaggcgaaagaatagtttgctttgagctcatcacacggctgcgtg 3467726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 10219135 - 10219185
Alignment:
Q  103 tttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactt 153  Q
    |||||| || ||| |||||||||||||||||||||||| ||||| ||||||    
T  10219135 tttataagtaagcagcatagtttagtttatgaattggttgatgtgggactt 10219185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 5e-27; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 10542450 - 10542321
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgcttta-aggaggtagaggtgctgtcaatttatatgtgagct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |   | |||| || || ||| |||||||||||||     
T  10542450 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgctttataactgttagatgtcctttcattttatatgtgagca 10542351  T
Q  117 gcatagtttagtttatgaattggtcgatgt 146  Q
    || ||||| |||| ||| ||| ||||||||    
T  10542350 gcttagttaagttgatgtattagtcgatgt 10542321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 42202435 - 42202496
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctt 79  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42202435 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacacacggctccgtgctt 42202496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 42211303 - 42211364
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctt 79  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42211303 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacacacggctccgtgctt 42211364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 43014372 - 43014430
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 76  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  43014372 gtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 43014430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 45316457 - 45316515
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 76  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  45316457 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggctccgtg 45316515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 42409655 - 42409594
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctt 79  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||    
T  42409655 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacagctccgtgctt 42409594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 42217276 - 42217339
Alignment:
Q  16 cagtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctt 79  Q
    |||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  42217276 cagtattctttagtaaaaggcgaaagaatagttcgctatgtcgtcatcacacggctccatgctt 42217339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 2176362 - 2176424
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgcttt 80  Q
    ||||||||||||||||||||||||||||||||||||||| || | |||||| |||||||||||    
T  2176362 gtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacgtctccgtgcttt 2176424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 45152051 - 45151994
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 75  Q
    ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||    
T  45152051 gtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacggctccgt 45151994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 42417699 - 42417640
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgc 77  Q
    |||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||    
T  42417699 gtattctttagtaaaaggcgaaagaataattcgctatgtcatcatcacacagctccgtgc 42417640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 51795074 - 51795018
Alignment:
Q  19 tattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 75  Q
    |||||||||||||||||||||| ||||||| ||||||| |||| ||||||| |||||    
T  51795074 tattctttagtaaaaggcgaaacaatagtttgctatgtcatcatcacacggttccgt 51795018  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 31558260 - 31558396
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  |  ||||||| ||||| ||| ||||||||  ||| |    
T  31558260 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttataaaaggtagaagtgctttcagtttatatgcaagcag 31558359  T
Q  118 catagtttagtttatgaattggtcgatgttggacttt 154  Q
    | | |||  ||||||| ||||| |||||| |||||||    
T  31558360 cttggttgggtttatgcattggccgatgtgggacttt 31558396  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 31555175 - 31555233
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 76  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31555175 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 31555233  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 31878294 - 31878236
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 76  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31878294 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 31878236  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 13568429 - 13568476
Alignment:
Q  22 tctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacgg 69  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||    
T  13568429 tctttagtaaaaggcgaaagaatagttcgctatgtgattatcacacgg 13568476  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 4042243 - 4042303
Alignment:
Q  16 cagtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 76  Q
    |||||||||||||| |||||||||||||||||| ||| || | ||| ||||||||| ||||    
T  4042243 cagtattctttagtcaaaggcgaaagaatagtttgctttgagctcatcacacggctgcgtg 4042303  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 17889480 - 17889422
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 76  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  17889480 gtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 17889422  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 25698866 - 25698804
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgcttt 80  Q
    |||||||||| ||||||||||||||||||| | ||||||||||| ||||| ||||||||||||    
T  25698866 gtattctttaataaaaggcgaaagaatagtccactatgtgatcatcacacagctccgtgcttt 25698804  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 49588200 - 49588258
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 76  Q
    ||||||||||||||||||||||||||||||||||| |||| | | ||||||| ||||||    
T  49588200 gtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacggttccgtg 49588258  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 20918725 - 20918685
Alignment:
Q  22 tctttagtaaaaggcgaaagaatagttcgctatgtgatcaa 62  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  20918725 tctttagtaaaaggcgaaagaatagtttgctatgtgatcaa 20918685  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 36790893 - 36790854
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtg 57  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  36790893 gtattctttagtaaaaggcgaaagaatagttcgctttgtg 36790854  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 46362545 - 46362588
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatca 61  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||    
T  46362545 gtattctttagtaaaaagcgaaataatagttcgctatgtcatca 46362588  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 21884102 - 21884160
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 76  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  21884102 gtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 21884160  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 46446272 - 46446211
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctt 79  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| |||||    
T  46446272 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacaaggctccatgctt 46446211  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 3641266 - 3641211
Alignment:
Q  16 cagtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggct 71  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  3641266 cagtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggct 3641211  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 3647084 - 3647026
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 76  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  3647084 gtattctttagtaaaaggcgaaagaatagtttgctatgtcatcatcacacggctccgtg 3647026  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 3649533 - 3649475
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 76  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||  |||||||    
T  3649533 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacaactccgtg 3649475  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 3657650 - 3657601
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacac 67  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  3657650 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 3657601  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 33891650 - 33891592
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 76  Q
    |||||||||||||||||||||||||||||||||||||||| | | ||||||| ||||||    
T  33891650 gtattctttagtaaaaggcgaaagaatagttcgctatgtgcttatcacacggttccgtg 33891592  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 27868671 - 27868725
Alignment:
Q  21 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 75  Q
    ||||| |||||||| ||||| ||||||| ||||||||||||  ||||||||||||    
T  27868671 ttcttaagtaaaagacgaaacaatagtttgctatgtgatcattacacggctccgt 27868725  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 5900583 - 5900520
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgcttta 81  Q
    ||||||||||||||||||||||||||||||||||| |||| | | ||||||| |||||| ||||    
T  5900583 gtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacggttccgtgattta 5900520  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 26568396 - 26568347
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacac 67  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  26568396 gtattctttagtaaaaggcaaaagaatagttcgctatgtgctcatcacac 26568347  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 43633449 - 43633480
Alignment:
Q  18 gtattctttagtaaaaggcgaaagaatagttc 49  Q
    ||||||||||||||||||||||||||||||||    
T  43633449 gtattctttagtaaaaggcgaaagaatagttc 43633480  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 2341338 - 2341391
Alignment:
Q  21 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccg 74  Q
    |||||| ||||||||||||||||||||||||| |||| |||  ||| |||||||    
T  2341338 ttcttttgtaaaaggcgaaagaatagttcgctttgtgctcactacatggctccg 2341391  T

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