View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_13 (Length: 550)
Name: NF17166_low_13
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_13 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 13 - 533
Target Start/End: Complemental strand, 26398744 - 26398233
Alignment:
| Q |
13 |
atactattcttttaacttttgacttggttaccggttcaccaaaatcaacacatttaattgnnnnnnnnnnnnnnaatggatatcccaaacaacaaggcat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26398744 |
atactattcttttaacttttgacttggttaccggttcaccaaaatcaacacatttaattgttttttttttttt-aatggatatcccaaacaacaaggcat |
26398646 |
T |
|
| Q |
113 |
tttcccgcgcctaagaatatctctttccttatctcacacatcgttgtttcaactatcagaagctctgccattctgccattgtttcacgcagaaagtcctc |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
26398645 |
tttcccgcgcctaagaatatctctttccttatctcacacatcgttgtttcaactatcagaagctctgccattctgccactgtttcatgcagaaagtcc-- |
26398548 |
T |
|
| Q |
213 |
aagtccccaaaggataagcaccaccactctgtcacttcttggtgtttttctctcacaattccaacaaaagagtaagagtatttcactttttaaggtacgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26398547 |
------ccaaaggataagcaccaccactctgtcacttcttggtgtttttctctcacaattccaacaaaagagtaagagtatttcactttttaaggtacgt |
26398454 |
T |
|
| Q |
313 |
ttttgttctcctcattgtcaatgcatgtgattcccctatattaaaaaacatgaatttggtactataactttgtctttgaaaatattttattctgtttttt |
412 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
26398453 |
ttttgctctcctctttgtcaatgcatgtgattcccctgtattaaaaaacatgaatttggtactatcactttgtctttgaaaatattttattgagtttttt |
26398354 |
T |
|
| Q |
413 |
atgtttgttcaacatgtattgataattagttgtaactatttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaa |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26398353 |
atgtttgttcaacatgtattgataattagttgtaactatttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaa |
26398254 |
T |
|
| Q |
513 |
tgagaccgtcaatagtgattc |
533 |
Q |
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||||||||||||||||||||| |
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| T |
26398253 |
tgagaccgtcaatagtgattc |
26398233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 533
Target Start/End: Complemental strand, 278140 - 277628
Alignment:
| Q |
13 |
atactattcttttaacttttgacttggttaccggttcaccaaaatcaacacatttaattgnnnnnnnnnnnnnnaatggatatcccaaacaacaaggcat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
278140 |
atactattcttttaacttttgacttggttaccggttcaccaaaatcaacacatttaattgtttttattttttttaatggatatcccaaacaacaaggcat |
278041 |
T |
|
| Q |
113 |
tttcccgcgcctaagaatatctctttccttatctcacacatcgttgtttcaactatcagaagctctgccattctgccattgtttcacgcagaaagtcctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
278040 |
tttcccgcgcctaagaatatctctttccttatctcacacatcgttgtttcaactatcagaagctctaccattctgccattgtttcatgcagaaagtcc-- |
277943 |
T |
|
| Q |
213 |
aagtccccaaaggataagcaccaccactctgtcacttcttggtgtttttctctcacaattccaacaaaagagtaagagtatttcactttttaaggtacgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
277942 |
------ccaaaggataagcaccaccactctgtcacttcttggtgtttttctctcacaattccaacaaaagagtaagagtatttcactttttaagatacaa |
277849 |
T |
|
| Q |
313 |
ttttgttctcctcattgtcaatgcatgtgattcccctatattaaaaaacatgaatttggtactataactttgtctttgaaaatattttattctgtttttt |
412 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
277848 |
ttttgatctcctcattgtcaatgcatgtgattcccctgtattaaaaaacatgaatttggtactatcactttgtctttgaaaatattttattgagtttttt |
277749 |
T |
|
| Q |
413 |
atgtttgttcaacatgtattgataattagttgtaactatttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaa |
512 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
277748 |
atgtttgttcaacatgtattgataattagttgtaactatttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaa |
277649 |
T |
|
| Q |
513 |
tgagaccgtcaatagtgattc |
533 |
Q |
| |
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||||||||||||||||||||| |
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| T |
277648 |
tgagaccgtcaatagtgattc |
277628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 533
Target Start/End: Complemental strand, 31029 - 30518
Alignment:
| Q |
13 |
atactattcttttaacttttgacttggttaccggttcaccaaaatcaacacatttaattgnnnnnnnnnnnnnnaatggatatcccaaacaacaaggcat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
31029 |
atactattcttttaacttttgacttggttaccggttcaccaaaatcaacacgtttaattgtttttattttttt-aatggatatcccaaacaacaaggcat |
30931 |
T |
|
| Q |
113 |
tttcccgcgcctaagaatatctctttccttatctcacacatcgttgtttcaactatcagaagctctgccattctgccattgtttcacgcagaaagtcctc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
30930 |
tttcccgcgcctaagaatatctctttccttatcgagcacatcgttgtttcaactatcagaagctctgccattctgccactgtttcatgcagaaagtcc-- |
30833 |
T |
|
| Q |
213 |
aagtccccaaaggataagcaccaccactctgtcacttcttggtgtttttctctcacaattccaacaaaagagtaagagtatttcactttttaaggtacgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30832 |
------ccaaaggataagcaccaccactctgtcacttcttggtgtttttctctcacaattccaacaaaagagtaagagtatttcactttttaaggtacac |
30739 |
T |
|
| Q |
313 |
ttttgttctcctcattgtcaatgcatgtgattcccctatattaaaaaacatgaatttggtactataactttgtctttgaaaatattttattctgtttttt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
30738 |
ttttgttctcctcattgtcaatgcatgtgattcccctgtattaaaaaacatgaatttggtactatcactttgtctttgaaaatattttattgagtttttt |
30639 |
T |
|
| Q |
413 |
atgtttgttcaacatgtattgataattagttgtaactatttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaa |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30638 |
atgtttgttcaacatgtattgataattagttgtaactatttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaa |
30539 |
T |
|
| Q |
513 |
tgagaccgtcaatagtgattc |
533 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
30538 |
tgagaccgtcaatagtgattc |
30518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 20647040 - 20646991
Alignment:
| Q |
452 |
ttttatacatatattaggaattaatggaacccattgatgaaaacgaagag |
501 |
Q |
| |
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|||||||||||||||||||| |||||||||| || ||||||| |||||| |
|
|
| T |
20647040 |
ttttatacatatattaggaactaatggaacctatcaatgaaaatgaagag |
20646991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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