View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_14 (Length: 537)
Name: NF17166_low_14
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Original strand, 18417670 - 18418166
Alignment:
| Q |
18 |
ttaaccatttaaaagaactaaagtattagtacttttttctatttgaaaacaaattagttatgaaagggatgagtatgaatttatattactctctgaatta |
117 |
Q |
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| T |
18417670 |
ttaaccatttaaaagaactaaagtattagtacttttttctatttgaaaacaaagtagttatgaaagggatgagtatgaatttatattactctctgaatta |
18417769 |
T |
|
| Q |
118 |
cctgaattaggtgtaataaagctacatcttttctcctcctcctcatttgtttttgaaataagattgtttgaagaatcaagaggaatagaaacactttcaa |
217 |
Q |
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| T |
18417770 |
cctgaattaggtgtaataaagctacatcttttctcctcctcctcacttgtttttgaaataagattgtttgaagaatcaagaggaatagaaacactttcaa |
18417869 |
T |
|
| Q |
218 |
attttgcagactttgatcttccataatgagcaatcttcattttcctctgagcattctgcaatgccatctgttctctcctcaagccagcaatactccctgg |
317 |
Q |
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| T |
18417870 |
attttgcagactttgatcttccataatgagcaatcttcattttcctctgagcattctgcaatgccatctgttctctcctcaagccagcaatactccctgg |
18417969 |
T |
|
| Q |
318 |
tgaatcagtgatcaaatttgaagagtaactcaatgatgcctcagtagaaccttctttaaagctctttgacttttttatagttgaaatctttgttgagttt |
417 |
Q |
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| T |
18417970 |
tgaatcagtgatcaaatttgaagagtaactcaatgatgcctcagtagaaccttctttaaagctctttgacttttttatagttgaaatctttgttgagttt |
18418069 |
T |
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| Q |
418 |
cttggtattacaatcttttcagaacttgtgttcaagagataagtttcattgactctctttgttgctggtggtcttggtgactttagctttggagaaa |
514 |
Q |
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| T |
18418070 |
cttggtattacaatcttttcagaacttgtgttcaagagataagtttcattgactctctttgttgctggtggtcttggtgactttagctttggagaaa |
18418166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 353
Target Start/End: Original strand, 26804282 - 26804429
Alignment:
| Q |
206 |
aaacactttcaaattttgcagactttgatcttccataatgagcaatcttcattttcctctgagcattctgcaatgccatctgttctctcctcaagccagc |
305 |
Q |
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|||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || || | ||| | ||||| ||||| || || | |||| |
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| T |
26804282 |
aaactctttcaaatttagcagattttgatcttccataatgagcaatcttcattttcctttgtgcttgctgaagtgccacttgttcccttctaacagcagc |
26804381 |
T |
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| Q |
306 |
aatactccctggtgaatcagtgatcaaatttgaagagtaactcaatga |
353 |
Q |
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| T |
26804382 |
tatgcttcctggtgaatcagtgatcaaagaagaagaataactcaatga |
26804429 |
T |
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