View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_17 (Length: 508)
Name: NF17166_low_17
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 492
Target Start/End: Complemental strand, 41926818 - 41926332
Alignment:
| Q |
9 |
agcagagaactggtgaggctccagagttttgaaagaatgaaatacctagtcaattagaatgtatagttttcaactctctgttgcagtctgacagtttcag |
108 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41926818 |
agcagagaaccggtgaggctccagagttttgaaagaatgaaatacctagtcaattagaatgtatagttttcaactctctgttgcagtctgacagtttcag |
41926719 |
T |
|
| Q |
109 |
agaacgcacaatagtcttgtggcataagtaaatctgaactagagatgggaagagaaaaagttgaacggctcagtgatgaacctctgaatggaattgatgt |
208 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
41926718 |
agaacgcacaatattcttgtggcataagtaaatctgaactagagatgggaagagaaaaagttgaacgtctcagtgatgaacctctgcatggaattgatgt |
41926619 |
T |
|
| Q |
209 |
tctagaagagctaagaaactaggtaagcaaagtcaggatggtgcgatcaacagttattannnnnnncgtggggagtgtagtacctgcatcagaatttgat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41926618 |
tctagaagagctaagaaactaggtaagcaaagtcaggatggtgcgatcaacagttattagggggggcgtggggagtgtagtacctgcatcagaatttgat |
41926519 |
T |
|
| Q |
309 |
tgattttccatgatttattgcaatggtaaatac--taggaaaatgaaactgcacattaatgactgaaaattgatgaataacaaaagtttctacaaaccgt |
406 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41926518 |
tgattttccatgatttattgcaatggtaaatactataggaaaatgaaactgcacattaatgactgaaaattgatgaataacaaaagtttctacaaaccgt |
41926419 |
T |
|
| Q |
407 |
-nnnnnnnngaagtctcgacaagactggcgtaagtggcaccggagacccttcagcaacaaaagatacaatatacaaactattggaat |
492 |
Q |
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| T |
41926418 |
aaaaaaaaagaagtctcgacaagactggcgtaagtggcactggagacccttctgcaacaaaagatacaatatacacactattggaat |
41926332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 36122644 - 36122749
Alignment:
| Q |
159 |
agagaaaaagttgaacggctcagtgatgaacctctga-atggaattgatgttctagaagagctaagaaactaggtaagcaaagtcaggatggtgcgatca |
257 |
Q |
| |
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|||||||| | ||||| ||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |
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| T |
36122644 |
agagaaaaggctgaacagctcactgatgattctctggtatgcaattgatgttctagaagagctaagaaactaggtaagcaaagacaggatgttgcaatcg |
36122743 |
T |
|
| Q |
258 |
acagtt |
263 |
Q |
| |
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|||||| |
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| T |
36122744 |
acagtt |
36122749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 36122482 - 36122610
Alignment:
| Q |
26 |
gctccagagttttgaaagaatgaaatacctagtcaattagaatgtatagttttcaactctctgttgcagtctgacagtttcagagaacgcacaatagtct |
125 |
Q |
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|||||||| ||||| ||| | ||||| || || |||||||||||||||||||| ||||| || ||||||||||| ||||| ||||||||| | ||| |
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| T |
36122482 |
gctccagaattttggaagtttaaaatagctggttaattagaatgtatagttttcgactctgcttt--agtctgacagtatcagaaaacgcacaacattct |
36122579 |
T |
|
| Q |
126 |
tgtggcataagtaaatctgaactagagatgg |
156 |
Q |
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|||||||| || ||||||||||||||||||| |
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|
| T |
36122580 |
tgtggcattagaaaatctgaactagagatgg |
36122610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 36123193 - 36123313
Alignment:
| Q |
284 |
tgtagtacctgcatcagaatttgattgattttccat----gatttattgcaatggtaaatactaggaaaatgaaactgcacattaatgactgaaaattga |
379 |
Q |
| |
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||||||||||||| |||||||| || |||||||| |||||||||||| | |||| |||| |||||||||||||| ||| | ||| ||| ||| | |
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| T |
36123193 |
tgtagtacctgcaatagaatttgcatggttttccatatgtgatttattgcaagtg-aaatgctagaaaaatgaaactgcatattcacgacggaatattca |
36123291 |
T |
|
| Q |
380 |
tgaataacaaaagtttctacaa |
401 |
Q |
| |
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| |||||||||||| ||||||| |
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| T |
36123292 |
tcaataacaaaagtctctacaa |
36123313 |
T |
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