View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17166_low_18 (Length: 507)
Name: NF17166_low_18
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 47 - 246
Target Start/End: Original strand, 39492447 - 39492642
Alignment:
| Q |
47 |
catgattttggattacattcttggcaacttcaattttgtttacatttgattgataacaaaggttaaaacacaaccagaccaaacaacacaaggtaatata |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39492447 |
catgattttggattacattcttggcaacttcaattttgtttacatttgattgataacaaaggttaaaacacaaccagaccaaacaacacagggtaatata |
39492546 |
T |
|
| Q |
147 |
agatcagatcactcacaatttattcacggatgtagggtaattaatattcacaatgacaagtgcaggatacacaatatcaactcctcgtaccggaaccatg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39492547 |
agatcagatcactcacaatttattcacggatgcaggg----taatattcacaatgacaagtgcaggatacacaatatcaactcctcgtaccggaaccatg |
39492642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 242 - 411
Target Start/End: Original strand, 39492908 - 39493081
Alignment:
| Q |
242 |
ccatgaggcagaaatgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagtttctttgcaatcttccttta |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39492908 |
ccatgaggcagaaatgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagcttctttgcaatcttccttta |
39493007 |
T |
|
| Q |
342 |
attgctaaaacttctaa----tatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
411 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39493008 |
attgctaaaacttctaatatgtatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
39493081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 47 - 246
Target Start/End: Complemental strand, 35839813 - 35839618
Alignment:
| Q |
47 |
catgattttggattacattcttggcaacttcaattttgtttacatttgattgataacaaaggttaaaacacaaccagaccaaacaacacaaggtaatata |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35839813 |
catgattttggattacattcttggcaacttcaattttgtttacatttgattgataacaaaggttaaaacacaaccagaccaaacaacacagggtaatata |
35839714 |
T |
|
| Q |
147 |
agatcagatcactcacaatttattcacggatgtagggtaattaatattcacaatgacaagtgcaggatacacaatatcaactcctcgtaccggaaccatg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35839713 |
agatcagatcactcacaatttattcacggatgcaggg----taatattcacaatgacaagtgcaggatacacaatatcaactcctcgtaccggaaccatg |
35839618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 242 - 411
Target Start/End: Complemental strand, 35839352 - 35839179
Alignment:
| Q |
242 |
ccatgaggcagaaatgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagtttctttgcaatcttccttta |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35839352 |
ccatgaggcagaaatgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagcttctttgcaatcttccttta |
35839253 |
T |
|
| Q |
342 |
attgctaaaacttctaa----tatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
411 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35839252 |
attgctaaaacttctaatatgtatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
35839179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 47 - 246
Target Start/End: Original strand, 47709981 - 47710176
Alignment:
| Q |
47 |
catgattttggattacattcttggcaacttcaattttgtttacatttgattgataacaaaggttaaaacacaaccagaccaaacaacacaaggtaatata |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
47709981 |
catgattttggattacattcttggcaacttcaattttgtttacatttgattgataacaaaggttaaaacacaaccagaccaaacaacatagggtaatata |
47710080 |
T |
|
| Q |
147 |
agatcagatcactcacaatttattcacggatgtagggtaattaatattcacaatgacaagtgcaggatacacaatatcaactcctcgtaccggaaccatg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47710081 |
agatcagatcactcacaatttattcacggatgcaggg----taatattcacaatgacaagtgcaggatacacaatatcaactcctcgtaccggaaccatg |
47710176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 242 - 416
Target Start/End: Original strand, 47710442 - 47710620
Alignment:
| Q |
242 |
ccatgaggcagaaatgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagtttctttgcaatcttccttta |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47710442 |
ccatgaggcagaaatgaacctcaatatgcttgagaaattaaattattaatcgcttcactaacaaaaatataaattagagcttctttgcaatcttccttta |
47710541 |
T |
|
| Q |
342 |
attgctaaaacttctaa----tatgctaactattgtacagaaaaatgataataatgctattaatatcacagccactact |
416 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47710542 |
attgctaaaacttctaatatgtatgctaactattgtacagaaaaatgataataatgctattaatatcacagccactact |
47710620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47709901 - 47709946
Alignment:
| Q |
1 |
tgaaatatactttattttttctcttctccacactaacctcaaactc |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47709901 |
tgaaatatactttattttttctcttctccacactaacctcaaactc |
47709946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 411 - 501
Target Start/End: Original strand, 44356339 - 44356429
Alignment:
| Q |
411 |
actacttcctttgttattttaccttgtaccaagtgagagtaacttcatcaatcatgacatcccccaattgagtccattcaatgtctgtgct |
501 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
44356339 |
actacttcctgttttattttaccttgtaccaagtgagagtaacttcatcaatcgtgatattccccaattgagtccatttaatgtctgtgct |
44356429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 5031420 - 5031464
Alignment:
| Q |
242 |
ccatgaggcagaaatgaacctcaatatgcttgagaaattaaatta |
286 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5031420 |
ccatgaggtagaaatgaacctcaatatgcttgagaaattaaatta |
5031464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University