View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_19 (Length: 498)
Name: NF17166_low_19
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 34335713 - 34336199
Alignment:
| Q |
1 |
aatttgagcaggtagtgatgatatttgtgttgcaatggatcaatcagaaagatcctaccaacttatgggagaatatgctgcagggaagcgtgtatacaat |
100 |
Q |
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| T |
34335713 |
aatttgagcaggtagtgatgatatttgtgttgcaatggatcaatcagaaagatcctaccaacttatgggagaatatgctgcagggaagcgtgtatacgat |
34335812 |
T |
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| Q |
101 |
ctagaacttggtcgtgatgcatcagtgtacattgtgttctgccctcaagggtctaatggtgccactgaagctccaagggcaaagcttccaaggcttaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34335813 |
ctagaacttggtcgtgatgcatcagtgtacattgtgttctgccctcaagggtctaatggtgccactgaagctccaagggcaaagcttccaaggcttaatg |
34335912 |
T |
|
| Q |
201 |
ctacctcagaacatcttgtagcatatgaatacaagtaaatgcatgaatttattcttcacttctattagatattacaaaatgtataaaatcgtcaaggatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34335913 |
ctacctcagaacatcttgtagcatatgaatacaagtaaatgcatgaatttattcttcacttctattagatattacaaaatgtataaaatcgtcaaggatt |
34336012 |
T |
|
| Q |
301 |
acatgccgggaagagtcttcttgatcaagcatcgcagaatggaatcctgaagtagtagccaccatatactaaacttttgtgttttgtaatgatctacnnn |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34336013 |
acatgccgggaagagtcttcttgatcaagcatcgcaaaatggaatcctgaagtagtagccaccatatactaaacttttgtgttttgtaatgatctacaaa |
34336112 |
T |
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| Q |
401 |
nnnnnttatatttatcaggaggattaaacttcataaatccaaacattttccattgattttgcagatttagaccaataaaacacaggt |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34336113 |
aaaaattatatttatcaggaggattaaacttcataaatccaaacattttccattgattttgcagatttagaccaataaaacacaggt |
34336199 |
T |
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