View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_low_2 (Length: 738)

Name: NF17166_low_2
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_low_2
NF17166_low_2
[»] chr2 (3 HSPs)
chr2 (9-722)||(40664957-40665672)
chr2 (328-630)||(40725193-40725495)
chr2 (9-269)||(40724382-40724641)
[»] scaffold0041 (1 HSPs)
scaffold0041 (363-600)||(109314-109551)
[»] chr7 (2 HSPs)
chr7 (363-600)||(41093745-41093982)
chr7 (666-718)||(38694469-38694521)
[»] chr1 (1 HSPs)
chr1 (363-600)||(27975937-27976174)
[»] chr3 (1 HSPs)
chr3 (666-721)||(9855814-9855869)
[»] chr4 (1 HSPs)
chr4 (666-715)||(11874272-11874321)
[»] chr5 (2 HSPs)
chr5 (690-722)||(3433515-3433547)
chr5 (666-722)||(39308790-39308846)


Alignment Details
Target: chr2 (Bit Score: 628; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 9 - 722
Target Start/End: Complemental strand, 40665672 - 40664957
Alignment:
Q  9 acatcatcataaccaacttcatcaagtctttcttcatcctctcttttcacaggttccccctcacagaagacctcagtgtctggagcaaccacacagaact 108  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||| |||    
T  40665672 acatcatcataaccaacttcatcaagtctttcttcatcatctcttttcacaggttccccctcacagaagatctcagtgtctggagcaaccgtacagtact 40665573  T
Q  109 ccccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaa 208  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40665572 caccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaa 40665473  T
Q  209 atacgctgtaaattacatacattaaaaaagttaagacttgtgcaaa--gattaacatatacatataacatattcaaaatgtaaaattataatgcctctaa 306  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40665472 ataggctgtaaattatatacattaaaaaagttaagacttgtgcaaaaagattaacatatacatataacatattcaaaatgtaaaattataatgcctctaa 40665373  T
Q  307 gacactaaagtttaaagattagacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaatgcatcaaagagatttccagtgagacc 406  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40665372 gaaactaaagtttaaagattagacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaaagcatcaaagagatttccagtgagacc 40665273  T
Q  407 ttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcaggacactgatgcacagacacaacatctccaagccgaactcgcaaa 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40665272 ttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcagtacactgatgcacagacacaacatctccaagccgaactcgcaaa 40665173  T
Q  507 ttcgacctcacaactttgttcatcctaatcctaggctcttcacagctatcatcagcaagagcaatacaaacagtatccttccttttctttccctgcaaca 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  40665172 ttcgacctcacaactttgttcatcctaatcctaggctcttcacaggtatcatcaccaagagcaatacaaacactatccttccttttctttccctgcaaca 40665073  T
Q  607 caacataaaccacattaacaaatannnnnnnaacattgaaattaagtattatatgatcacaattttatatatacgaaattttgttcttacatgtgtccat 706  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40665072 caacataaaccacattaacaaatatttttttaacattgaaattaagtattatatgatcacaattttatatatacgaaattttgttcttacatgtgtccat 40664973  T
Q  707 tatatatattcattct 722  Q
    ||||||||||||||||    
T  40664972 tatatatattcattct 40664957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 328 - 630
Target Start/End: Original strand, 40725193 - 40725495
Alignment:
Q  328 gacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaatagg 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40725193 gacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaaagcatcaaagagatttccagtgagaccttcaattgtatcatcaatagg 40725292  T
Q  428 cagaatgtgcacacgtttaccatacttgacatcaggacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttc 527  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40725293 cagaatgtgcacacgtttaccatacttgacatcagtacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttc 40725392  T
Q  528 atcctaatcctaggctcttcacagctatcatcagcaagagcaatacaaacagtatccttccttttctttccctgcaacacaacataaaccacattaacaa 627  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40725393 atcctaatcctaggctcttcacaggtatcatcaccaagagcaatacaaacactatccttccttttctttccctgcaacacaacataaaccacattaacaa 40725492  T
Q  628 ata 630  Q
    |||    
T  40725493 ata 40725495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 40724382 - 40724641
Alignment:
Q  9 acatcatcataaccaacttcatcaagtctttcttcatcctctcttttcacaggttccccctcacagaagacctcagtgtctggagcaaccacacagaact 108  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  40724382 acatcatcataaccgacttcatcaagcctttcttcatcctctcttttcacgggttccccctcgcagaagacctcagtgtctggagcaaccgcacagaact 40724481  T
Q  109 ccccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaa 208  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |||    
T  40724482 ccccaggatcagtttcattgaccttaaattctacacttctcatccctccccgcacaagaaatagatctccttttctgaccggacaataagcctccaagaa 40724581  T
Q  209 atacgctgtaaattacatacattaaaaaagttaagacttgtgcaaagattaacatatacat 269  Q
    ||| ||||||||||| |||||| ||||||||| ||||||||||| |||  || ||||||||    
T  40724582 ataggctgtaaattagatacatcaaaaaagtt-agacttgtgcagagacaaaaatatacat 40724641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 363 - 600
Target Start/End: Complemental strand, 109551 - 109314
Alignment:
Q  363 aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag 462  Q
    ||||||||||| ||| |||||||||||||||| ||||| |  |||||||| |||||||| |  || |||||||| || |  || ||||| ||||||||||    
T  109551 aactcacgttttaagtatgcatcaaagagattcccagtaactccttcaatagtatcatcgacgggaagaatgtgaactctctttccatatttgacatcag 109452  T
Q  463 gacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttcatcctaatcctaggctcttcacagctatcatcagc 562  Q
     ||| |||||||| || |||||||||||||||| ||| |  | |||   ||||||||| |||||||| || ||  | |||||||||||  | ||||||||    
T  109451 cacattgatgcaccgaaacaacatctccaagcctaaccctaagattgttcctcacaaccttgttcattcttatttttggctcttcacatgtttcatcagc 109352  T
Q  563 aagagcaatacaaacagtatccttccttttctttccct 600  Q
     || |||||||| | |||||| ||||||||||| ||||    
T  109351 gagtgcaatacatatagtatctttccttttcttaccct 109314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 363 - 600
Target Start/End: Original strand, 41093745 - 41093982
Alignment:
Q  363 aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag 462  Q
    ||||||||||| ||| |||||||||||||||| ||||| |  |||||||| |||||||| |  || |||||||| || |  || ||||| ||||||||||    
T  41093745 aactcacgttttaagtatgcatcaaagagattcccagtaactccttcaatagtatcatcgacgggaagaatgtgaactctctttccatatttgacatcag 41093844  T
Q  463 gacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttcatcctaatcctaggctcttcacagctatcatcagc 562  Q
     ||| |||||||| || |||||||||||||||| ||| |  | |||   ||||||||| |||||||| || ||  | |||||||||||  | ||||||||    
T  41093845 cacattgatgcaccgaaacaacatctccaagcctaaccctaagattgttcctcacaaccttgttcattcttatttttggctcttcacatgtttcatcagc 41093944  T
Q  563 aagagcaatacaaacagtatccttccttttctttccct 600  Q
     || |||||||| | |||||| ||||||||||| ||||    
T  41093945 gagtgcaatacatatagtatctttccttttcttaccct 41093982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 666 - 718
Target Start/End: Complemental strand, 38694521 - 38694469
Alignment:
Q  666 caattttatatatacgaaattttgttcttacatgtgtccattatatatattca 718  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38694521 caattttatatatacgaaattttgttcttacatgtgtccattatatatattca 38694469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 363 - 600
Target Start/End: Complemental strand, 27976174 - 27975937
Alignment:
Q  363 aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag 462  Q
    |||||||| || ||| | |||||||| ||||| ||||| |  |||||||| |||||||||| ||| ||||| || || || || ||||| ||||||||||    
T  27976174 aactcacgctttaagtaagcatcaaatagattcccagtaaccccttcaatagtatcatcaacaggaagaatatgaactcgctttccatatttgacatcag 27976075  T
Q  463 gacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttcatcctaatcctaggctcttcacagctatcatcagc 562  Q
    |||| ||||| ||||| |||||||| ||||||| ||| |  | |||    |||||||| || ||||| || ||| | |||||||||||  | ||||||||    
T  27976074 gacattgatgaacagaaacaacatcaccaagcctaaccctaagattgtttctcacaaccttattcattcttatctttggctcttcacatgtttcatcagc 27975975  T
Q  563 aagagcaatacaaacagtatccttccttttctttccct 600  Q
    ||| ||||||||||  |||||||| |||||||| ||||    
T  27975974 aagtgcaatacaaatcgtatcctttcttttcttaccct 27975937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 666 - 721
Target Start/End: Complemental strand, 9855869 - 9855814
Alignment:
Q  666 caattttatatatacgaaattttgttcttacatgtgtccattatatatattcattc 721  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9855869 caattttatatatacgaaattttgttcttacatgtgtccattatatatattcattc 9855814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 666 - 715
Target Start/End: Complemental strand, 11874321 - 11874272
Alignment:
Q  666 caattttatatatacgaaattttgttcttacatgtgtccattatatatat 715  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  11874321 caattttatatagacgaaattttgttcttacatgtttccattatatatat 11874272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 690 - 722
Target Start/End: Original strand, 3433515 - 3433547
Alignment:
Q  690 ttcttacatgtgtccattatatatattcattct 722  Q
    |||||||||||||||||||||||||||||||||    
T  3433515 ttcttacatgtgtccattatatatattcattct 3433547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 666 - 722
Target Start/End: Complemental strand, 39308846 - 39308790
Alignment:
Q  666 caattttatatatacgaaattttgttcttacatgtgtccattatatatattcattct 722  Q
    ||||||||||||||| || || | ||||||||||||||  |||||||||||||||||    
T  39308846 caattttatatatacaaatttgttttcttacatgtgtctgttatatatattcattct 39308790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University